Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3422 ATGGCCTCCCTAGTAAGGATTGACTCCTTAGTCAACAACTTCTCTCCCTCCTCCCAGAATGCTCCTCCTACTCCAACAAATAAGAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTCGTCTCCCTCTCACCCAAGACCTTGCTTGAATCAGATCGTTATGTCTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGCCGCCGCCACAAGGTGCCCTGGAAGCTCCTGAAGAGGGAGACTCCGCTGGTGAAGAAGCGAGTCTTCGTTTGCCCGGAGCCCACTTGCTTGCACCATGACCCGTGCCATGCTCTGGGTGATCTCGTTGGCATAAAGAAGCATTTCAGAAGAAAACACAGCAGTCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCAGTGCAGTCTGACTACAAAGCACATCTCAAAACATGTGGCACCCGCGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATCGAACACCAAGACGCGTGCAACGTGGGGTGCTTGGGGCCAGAAACACAGCCTGCTGTGTGCTTGTCTCAAACAGCTTCAAGCCCTTCCAGCGAAAACAATTTCACCACAGGTGTAATAATTCCAAACCCCATCGTAACAGTGGTGGAACCTGCCTTATTCACCAACAACGACAACAAAGTGAACAAACTCCAACCCAACCTTGAGCTTCAGCTCTCTTCAGCCACTCCTACTGCAGAGTTGCAGCTATCCATAGGGTCATTGGAAATAAGCAACACGAGGGAGAAGTCGTTGGGAGAAAGGGTTAAAGATGAGGCACGGGAGCAGCTGAGAATAGCGGTGGCGGAAAAAGCGTATGCGGAGGAGGCGAGGAAGCAAGCGACGAGGCAGATGGAGCTGGCGGAACTGGAGTTCACTAATGCCAAAAGGATAAGACAACAAGCGCTAGAGGAACTGGACAAAGCCTGTGCCTTGAAGGACCATGCAATCAAACAGATCAATTCCACCATGCTTCAAATCACTTGCCTTGCTTGCAAGCACCATTTCCAATCGCCAACCATAACGTGTGCTGCTCCTCCCGACCAGACCTCTTTCGTCTTCAGCTACATAACAACAGACGGTGGCCGACTTGGAAAACATCGTGTCAAACCCATTAACTCATAG 1188 0.5152 MASLVRIDSLVNNFSPSSQNAPPTPTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGCLGPETQPAVCLSQTASSPSSENNFTTGVIIPNPIVTVVEPALFTNNDNKVNKLQPNLELQLSSATPTAELQLSIGSLEISNTREKSLGERVKDEAREQLRIAVAEKAYAEEARKQATRQMELAELEFTNAKRIRQQALEELDKACALKDHAIKQINSTMLQITCLACKHHFQSPTITCAAPPDQTSFVFSYITTDGGRLGKHRVKPINS* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3422 395 PANTHER OS03G0310200 PROTEIN 18 380 IPR039288 GO:0009630
Pvu2g3422 395 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Pvu2g3422 395 MobiDBLite consensus disorder prediction 12 44 - -
Pvu2g3422 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Pvu2g3422 395 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Pvu2g3422 395 Gene3D Classic Zinc Finger 35 98 - -
Pvu2g3422 395 Coils Coil 278 326 - -
Pvu2g3422 395 MobiDBLite consensus disorder prediction 12 26 - -
Pvu2g3422 395 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 18 380 - -
Pvu2g3422 395 SMART c2h2final6 57 79 IPR013087 -
Pvu2g3422 395 SMART c2h2final6 98 128 IPR013087 -
Pvu2g3422 395 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3422 Pvu-Chr2 48946835 48949462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3422 24 382 C2H2 Transcription Factor Family AT2G01940 56.931 3.86e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu2g3422 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3422 K25871 - gmx:100798167 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3422 2 48946835 48949462 Pvu2g3422 2 48946835 48949462 ECH
Pvu2g3422 2 48946835 48949462 Pvu4g1545 4 42627978 42631437 PCT