Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3421 ATGGAAGGAGGATCTGGAGAGAAGTGGAAGAGTGTCTACAGAGAGTGCTTGAGAAACCATGCAGCCAGCCTCGGAAGCTACGCCACCGACGGCTGCGGGGAGTTCACGCTCGACAGCGGGGGCCTGCAATGCGCGGCCTGCGGCTGCCACCGCAATTTCCACCGGAAAGTGAAGTACCCGGTAGGCCCGGAAAGTCCTGGAGCGATGGATTACGGCGGCGAGGGGGGGAGTAAGAAGCGGTTCAGGTCGAAGTTCAGCGCAGATCAGAAGGAGAAGATGCTGGCGTTTGCTGAGAAGCTTGGTTGGAAGCTTCAGAGGAAGGATCTGGATGATGAGATTGAGAGGTTCTGCAGAAGCATTGGAGTGAGTAGACAGGTTTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCTTCATCTTCTTCTGCTTCTGCTTCTGCTTCCACCGGAAACATCTCCTCCCTCACCCACTGA 474 0.5464 MEGGSGEKWKSVYRECLRNHAASLGSYATDGCGEFTLDSGGLQCAACGCHRNFHRKVKYPVGPESPGAMDYGGEGGSKKRFRSKFSADQKEKMLAFAEKLGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASASASTGNISSLTH* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3421 157 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 8 145 - -
Pvu2g3421 157 Pfam ZF-HD protein dimerisation region 12 57 IPR006456 -
Pvu2g3421 157 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 145 - -
Pvu2g3421 157 SUPERFAMILY Homeodomain-like 67 136 IPR009057 -
Pvu2g3421 157 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 78 136 IPR006455 -
Pvu2g3421 157 Gene3D - 67 142 - -
Pvu2g3421 157 MobiDBLite consensus disorder prediction 135 157 - -
Pvu2g3421 157 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 57 IPR006456 -
Pvu2g3421 157 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 13 56 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3421 Pvu-Chr2 48938847 48939320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3421 10 137 ZF-HD Transcription Factor Family AT4G24660 44.509 1.78e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu2g3421 ZF-HD_dimer 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3421 - - pvu:PHAVU_002G332400g 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3421 2 48938847 48939320 Pvu4g1548 4 42678869 42679529 PCT