Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3415 ATGGTTGTGGGTTGGAGAAGACTGAGAAGAGGGAAAAAGAACAAGGAGAAGAAGGAAGAGAAGGTGGAGGAGGAGGTGGTGACTCCCAACCACTTCCAGTGCCCAATTTCTCTCGAGTTGATGAAAGACCCCGTCACGCTCTGCACTGGCATTACCTACGATCGACAATCCATAGAAACGTGGTTTGACCAAGGTCGTTTCACATGCCCCCTCACCAACCACCTCCTCTCCAACTTCGACCTCATTCCCAACCACACTCTCAGGATCATCATCCAAGACTGGTGCGTGGAGAATCAACGCTGTGGCGTTCAGAGAATCCCAACCCCCAGAGTACCCATCACCCCCAACGACGTCCACCACCTTCTTCTCCTTCTGCATGCCAAGGCCTCGCGTCTCGACCAAGACGCGTGCCTTCAATCGGTGCACAAGATTCAGAGGTTGGGTGCAGAGAGCCAGAGAAACATGCGTTGTTTGGTGGATAACGGAGCACCCACTGCATTAGCCTCCGCTTTTCATGCATTTGCCAATGCTAATGACTCCGTGGAGAGGAATGGTGATGTGAGCGTGCTTCGTCAGATCTTGTCGGCTCTCAACTCCATGTTTTCAACCCAATTGGAAGAAGAAGCCATCCAACATTTGGGGTCTCCACCTTCTTTACGTTGTATTGTGTCTTTTCTGAGACGACAGGATCTCTCCATGAAAGAGAACTCAATCGTCGCACTCAAACACCTTCTTTCTTTTGGTCATCATCAGCACCTGGAGGCCTTGGTGCAAATTGAAGGAATTCATCAACTTTTGCTCCAATTTCTTAACCCAAGAATCTTTAGTCCCACCATTGTTAAAGCTTCCTTGGCGGTGGTTTGGTATTTGGTTTCGTCCTCCTCTCCTTGTACCCACAAAATGAGATTGAAGTTTATTGAATTGGGCATGGTTTGTGTGGTGCTGGACATTCTGGTTGACTCCGAAAGGAGCCTCTGTGAGAAGGGTCTGGGTGTTCTTGACTCCCTCTGCGCTTGTGAAGAAGGAAGAGAAAAGGCTTATGGCAACGCGTTGGCGATTCCTCTTCTGGTGAAGAAGCTGTTGCGAGTTTCGTCGTTGGGCTCGGATCACTCTGTTTGTGCCATTTGGAGGCTGTGCAAATTTGGAGAAGAGATGGTTGTGGTGGAGGCTCTGCAAGTGGGTGCCTTTCAGAAGCTTTTGCTGGTATTGCAAGTGGGTTGTGCTGATGAGACGAAGGAGAAAGCAACCCAACTTCTCAAATTGCTAAATCCTTACAGGGACGCCGCTAAAAAATGCATCGATTCCGATTTCAACAACCTTAAAACATCAATTTAA 1335 0.4876 MVVGWRRLRRGKKNKEKKEEKVEEEVVTPNHFQCPISLELMKDPVTLCTGITYDRQSIETWFDQGRFTCPLTNHLLSNFDLIPNHTLRIIIQDWCVENQRCGVQRIPTPRVPITPNDVHHLLLLLHAKASRLDQDACLQSVHKIQRLGAESQRNMRCLVDNGAPTALASAFHAFANANDSVERNGDVSVLRQILSALNSMFSTQLEEEAIQHLGSPPSLRCIVSFLRRQDLSMKENSIVALKHLLSFGHHQHLEALVQIEGIHQLLLQFLNPRIFSPTIVKASLAVVWYLVSSSSPCTHKMRLKFIELGMVCVVLDILVDSERSLCEKGLGVLDSLCACEEGREKAYGNALAIPLLVKKLLRVSSLGSDHSVCAIWRLCKFGEEMVVVEALQVGAFQKLLLVLQVGCADETKEKATQLLKLLNPYRDAAKKCIDSDFNNLKTSI* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3415 444 Pfam U-box domain 29 99 IPR003613 GO:0004842|GO:0016567
Pvu2g3415 444 CDD RING-Ubox_PUB 32 73 IPR045210 -
Pvu2g3415 444 PANTHER WDSAM1 PROTEIN 15 443 IPR045185 GO:0061630
Pvu2g3415 444 Gene3D - 114 438 IPR011989 -
Pvu2g3415 444 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Pvu2g3415 444 SUPERFAMILY RING/U-box 25 103 - -
Pvu2g3415 444 SUPERFAMILY ARM repeat 120 422 IPR016024 -
Pvu2g3415 444 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 443 - -
Pvu2g3415 444 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Pvu2g3415 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3415 Pvu-Chr2 48911860 48913194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3415 8 441 U-box Gene Family AT5G37490 39.686 3.63e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3415 - - vun:114179193 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3415 2 48911860 48913194 Pvu4g1562 4 42808030 42809733 PCT