Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3413 ATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAGGAATGGATTCGTCGAGGATCCAACGATCAGAATCAGAATCAGAATCTGAATCAGAATCAGAATGCTGCCGCTGCTTCTGGTTCCTCCAATACAACAAATCGCCATAGGAGGAGCGCTCCTATTCCTAGTCACAATCCCAATCCCAATCCTGTTCCTAATCCGAAGAGTAATGTGCAGAAGAGATTCAATTTGAGGGACTCTAATTTGCCTCAGCTGCTGCAAGAGATCCAGGACAAGCTCGTGAAAGGTGCTGTCGAGTGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCTCCAATCTGGTCTTGCTCCAGTTGTTTTTCCATCTTTCACCTCAATTGTATAAAGAAGTGGGCGCGTGCACCCACTTCTGTGGATGTGTCTGTCGACAAGAATCAGCGGTTCAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCTCATCATCCAAGGAGATTCGGTATGTTTGCTTCTGTGGGAAGAGGCCTGACCCCCCCTCCGATTTGTATCTCTTGCCACATTCCTGTGGAGAACCATGTGCCAAACCTCTTGAAAGGGAGATTGGCGGGGATAAGGAGGTTCTTTGTCCTCATGTTTGTGTCTTGCAGTGCCATCCCGGTCCTTGCCCTCCTTGCAAAGCGTTTGCCCCTCCACGTTTGTGTCCTTGCGGGAAGAAAAATATCACCACCCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGTGGGCGTCATCGGTGTGAGCAAATCTGTCATCTGGGACCTTGTGATCCTTGTAAGATTCCAGTCAACGCCTCTTGCTTTTGCAGTAAAAGGACGGAGTCCATTCTTTGTGGGGACATGGCTCTGAAAGGTGAAATCAAAACCGAAGGTGGAGTTTTCTCTTGTGGTTCAACCTGTGGGAAGAAACTTGGTTGCGGTAATCATATTTGTATCGAGACTTGTCATCCCGACAGCTGTGGGGAGTGTGGATTATTACCATCCCATATTAAGACATGCTGTTGCGGGAAAACTAAATTGAAGCAGGAACGGCAGAGTTGTTTAGACCCTATACCTACCTGTTCACAAGTATGTGGGAAGACCCTTCCTTGCGGGATTCATCGGTGTGAAGAGGCATGCCACGCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCCCAGAAATGTCGATGTGGCTCTACTTCCCGAACCGTGGAGTGCTGTAAGACAAAAGTGGATGCTGTGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATAGATGCAGTGAACGATGTTGTCCACTTTCTAATCCAAATAATGTTCAAATTGCGGATTGGGATCCTCACTTCTGTTCATTGCCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCATGTGAATCCCTATGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTTACATCCAGCGTCTCACAGCTGCCATTTTGGAGATTGCCCTCCTTGTTCGGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAATTCTTCGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAAACTCTGTGGGAAGACCAGACAGTGCGGTTTACACGCATGTGGCAGAACATGTCACCTTCCACCTTGTGATAATCCATCTGCAGTGCCTGGTACCCGTGCCTCTTGTGGGCAAACATGTGGTGCTCCAAGAAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCTTCAACTCCTTGTCCAGATACAAGATGCGAATTCCCTGTCACAATTGCATGTTCTTGTGGCCGAATTACAGCGACTGTTCCTTGTGATGCTGGTGGAAGCTGTGCTAATTATAATGCTGATGCTGTACATGAAGCTTCCATTATTCAAAAGTTGCCTGTGCTGCTTCAACCCGTTGCTGCAAATGGAAAGAAAGCTCCCCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAGCGTAAACGGGTTCTTGCTGATGCCTTTGAGATTACCGCTCCAAATCTGGATTCTCTCCATTTTGGTGACAATCCTGTTGCTTCTGAATTGCTTGCTGACATGTTGAGACGTGATCTTAAATGGGTTTTATCTGTCGAGGAGAGATGCAAGGTTTTGGTTCTTGGCAAGAACAGGGGAAATACACAAGGTCCAAAAATCCATGCTTTCTGTCCCATGTTAAAGGACAAAAGAGATGCAGTGAGGGTCATTGCTGAAAGATGGAAGCTTGCGGTGTATGTAGCTGGTCGTGAGCCAAAGCGTTTTGTACTTGTTCATGTTACCCCCAAATCAAGAGCTCCTGCTCGTGTGCTAGGGGTTAAGGGCACTACAACTGTAAATGCACCCATTCCTCCTGCATTTGATCCTTTAGTAGATATGGATCCTCGGCTTGTTGTCTCTTTTCTAGACTTGCCAAGGGAGGCAGATATCAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTGAATGACAAAAATGCACTGGCTGTTTTTAATGATCCAGCCCGAGCTGCAACTGCACTGAGGAGGTTGGATCATGGTACTGTTTATCAGGGAGCCGTGGTCGTGATTGTTCAGAATGTTGGGGCATCGGCAGCATCTTCAGCTACCAATCCTTGGGGAGGATCTGGGACAACGAAAGGAGGAGGATCACTGGCAGCATTGAAGGGTAATCCGTGGAAAAAAGATGTTGTTCAAGAGCCAGGTTGGAAAGATTCTTGGGGCGATGAGGAGTGGGCTACTGGTTCTGCTAATGTCCATTTGCCTATTCAGAAGAAAGAAACCCTCATATCTGCGTCAGTAAACCCTTGGAGTGTCTTGAATCAAGAATCTTCTTCAAGTTCATCGACCGCAGCTGTTAAAAGTGATGTTTCTAGGGAACACTCAGAAAGTAGTTCTGTAACAAACTTGGAGCCTCATAATGGCGGTTCAAGTATAGGAGGACAGCATGCAGGAAACTTGCATACTTCAGAAGATTCTGAGGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG 3237 0.4714 MSSQERSQRSRVPRQEWIRRGSNDQNQNQNLNQNQNAAAASGSSNTTNRHRRSAPIPSHNPNPNPVPNPKSNVQKRFNLRDSNLPQLLQEIQDKLVKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLSSSKEIRYVCFCGKRPDPPSDLYLLPHSCGEPCAKPLEREIGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCKIPVNASCFCSKRTESILCGDMALKGEIKTEGGVFSCGSTCGKKLGCGNHICIETCHPDSCGECGLLPSHIKTCCCGKTKLKQERQSCLDPIPTCSQVCGKTLPCGIHRCEEACHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKVDAVKFTCEKPCGQKKNCGRHRCSERCCPLSNPNNVQIADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCLHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSAVPGTRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCEFPVTIACSCGRITATVPCDAGGSCANYNADAVHEASIIQKLPVLLQPVAANGKKAPLGQRKLMCNDDCAKLERKRVLADAFEITAPNLDSLHFGDNPVASELLADMLRRDLKWVLSVEERCKVLVLGKNRGNTQGPKIHAFCPMLKDKRDAVRVIAERWKLAVYVAGREPKRFVLVHVTPKSRAPARVLGVKGTTTVNAPIPPAFDPLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATALRRLDHGTVYQGAVVVIVQNVGASAASSATNPWGGSGTTKGGGSLAALKGNPWKKDVVQEPGWKDSWGDEEWATGSANVHLPIQKKETLISASVNPWSVLNQESSSSSSTAAVKSDVSREHSESSSVTNLEPHNGGSSIGGQHAGNLHTSEDSEVVDDWEKACE* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3413 1078 CDD NF-X1-zinc-finger 191 249 - -
Pvu2g3413 1078 SMART znfxneu3 594 623 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SMART znfxneu3 266 285 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SMART znfxneu3 446 476 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SMART znfxneu3 541 559 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SMART znfxneu3 632 653 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SMART znfxneu3 388 407 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SMART znfxneu3 484 503 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SMART znfxneu3 211 229 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SMART znfxneu3 330 349 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 CDD RING-CH-C4HC3_NFX1 101 158 - -
Pvu2g3413 1078 MobiDBLite consensus disorder prediction 941 962 - -
Pvu2g3413 1078 MobiDBLite consensus disorder prediction 1 74 - -
Pvu2g3413 1078 ProSiteProfiles Zinc finger PHD-type profile. 99 160 IPR019787 -
Pvu2g3413 1078 CDD NF-X1-zinc-finger 256 304 - -
Pvu2g3413 1078 MobiDBLite consensus disorder prediction 1036 1063 - -
Pvu2g3413 1078 CDD NF-X1-zinc-finger 320 363 - -
Pvu2g3413 1078 MobiDBLite consensus disorder prediction 19 57 - -
Pvu2g3413 1078 CDD NF-X1-zinc-finger 474 517 - -
Pvu2g3413 1078 MobiDBLite consensus disorder prediction 1064 1078 - -
Pvu2g3413 1078 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 2 1075 - -
Pvu2g3413 1078 CDD NF-X1-zinc-finger 531 579 - -
Pvu2g3413 1078 CDD NF-X1-zinc-finger 378 426 - -
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 330 347 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 388 405 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 594 609 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 213 228 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 446 457 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 549 558 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 484 501 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 625 650 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 Pfam NF-X1 type zinc finger 266 284 IPR000967 GO:0005634|GO:0008270
Pvu2g3413 1078 SUPERFAMILY RING/U-box 92 161 - -
Pvu2g3413 1078 MobiDBLite consensus disorder prediction 1014 1029 - -
Pvu2g3413 1078 CDD NF-X1-zinc-finger 621 670 - -
Pvu2g3413 1078 ProSiteProfiles Zinc finger RING-type profile. 102 158 IPR001841 -
Pvu2g3413 1078 MobiDBLite consensus disorder prediction 1014 1078 - -
Pvu2g3413 1078 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 2 1075 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3413 Pvu-Chr2 48900237 48904140 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Pvu2g3413 zf-NF-X1 1.7e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3413 K12236 - gmx:106799700 1904.41