Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3363 ATGGCAGGCTCGGATCCGTCCAAAAAAGTGGCTGATAGATATCTGAAGCGTGAAGTTCTTGGTGAAGGTACCTATGGAGTTGTGTACAAAGCCATTGATACCCACACAGGACAGACGGTTGCAATCAAGAAAATTCGGCTTGGCAAGCAGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATAAAGCTTCTTAAAGAGCTTAAGGATCCTAATATTGTTGAATTGATAGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGACCGAAATATTTTTCTTTCACCGGCTGATACAAAATCCTACCTTCAAATGACTCTAAAAGGTCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAACTGAAACTTGCAGATTTTGGTTTAGCACGAATGTTTGGAAGCCCAGATAGAAGGTTCACTCATCAGGTTTTCGCTCGGTGGTATAGAGCTCCTGAGCTATTATTTGGTGCCAAGCAATATGGTTCCGGGGTTGATGTCTGGGCTTTAGGTTGTATATTTGCTGAACTTCTTCTCCGTCGACCCTTTTTGCAGGGTACAAGTGACATCGATCAATTAGGAAAGATTTTTTTGGCATTTGGCACTCCAACATCTTCTCAGTGGCCTGATATGGTATTCCTGCCTGATTATGTCGAATATCAATATGTTCCTGCACCCCCTCTGCGTTCTTTATTTCCTATGGCAACTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCCAAAGCTAGAATTTCATTGCAGCAGGCACTAGAGCATAGGTACTTCTCTTCTGCTCCTCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCTAAGAAGGAATCTAAGGCTTCTGATTTCAATTTACAGGAGGGTCCTACTGTGTTATCACCTCCAAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAATTCCCAGCAAGCAGACAAGGTTGATGGCAGTTTTGGTGATTTCAGGCAGACAACTGATGATAATTCAGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATAA 1161 0.4195 MAGSDPSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADTKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGSGVDVWALGCIFAELLLRRPFLQGTSDIDQLGKIFLAFGTPTSSQWPDMVFLPDYVEYQYVPAPPLRSLFPMATDDALDLLSKMFTYDPKARISLQQALEHRYFSSAPLPSDPDKLPRPAPKKESKASDFNLQEGPTVLSPPRKSRRVMPGRDGFEGNSQQADKVDGSFGDFRQTTDDNSGKNESAPMSVDFSIFG* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3363 386 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Pvu2g3363 386 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3363 386 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Pvu2g3363 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Pvu2g3363 386 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Pvu2g3363 386 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Pvu2g3363 386 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3363 386 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Pvu2g3363 386 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Pvu2g3363 386 MobiDBLite consensus disorder prediction 362 377 - -
Pvu2g3363 386 MobiDBLite consensus disorder prediction 295 386 - -
Pvu2g3363 386 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Pvu2g3363 386 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3363 Pvu-Chr2 48507345 48511684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3363 8 386 Core Cell Cycle Gene Families AT1G18040 73.615 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Pvu2g3363 Pkinase 4.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3363 K02202 - gmx:100776618 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3363 2 48507345 48511684 Pvu4g1609 4 43346494 43351269 PCT