Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3346 ATGCCTGTTGTGACAAACACAACAACACCTACAGTGGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAGCCACCACCACCACCACCCCATTCTAGAATCAGATCCAAACCCTCAAATCCCTTCCATAATCCAATCAGCTAGGGGAAAGTCCACCATATCCTCCTTGCTCCTCTCCACTTTCTCCAACAACACTTCCTCCTCCAGTAATGACACCCCCACCATCAATGGCACCGCCCAAAGCAAGAAAAAAAGCAACTTTTCTGCAGCAACCTTAAGAGGGTTGGGGTGCACCGCCGGCGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAGAAGAAGCACAAGAGAGCCACCAGCGGTGGCAAGAACAAGACTTTCCATGGTGGGATTCTAGAGGGTTCCAATCCTGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGCAGACACTGCTGCCTCTGTTGATTGTGTTGTGGCCAGAAAGAATGTATCTGCAAGAGGGAAAATTGATGTGGATAAGATCACTCACAGGGAGCGATCATCCTATGCGGGAAGGCGCACAGAAACCTACACTTTTCTGGACACTGATTCTGACATTTTCACGCCACGCTCTGCCTCTGATTCTTATGGCACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTTAATTCACATGATCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCACGTGAACACCGGACTCAAGGAAGATGAGATGGGACGGAACATAAGGAAGGCTAGACTTCAAATTTGGGATGATACATCAAAGCATCAAATAGATAAAGAGTGCAGCATTTGCCAGGAGGAGTATGAAGCTGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGTTATCACTTTCAGTGTATAAAACAATGGCTTTCACAGAAAAATTTCTGCCCAGTATGTAAGCAGCAAGTTGCAGCACGACACTGA 1128 0.4707 MPVVTNTTTPTVAEHIKWRRPRNQFSHHHHHPILESDPNPQIPSIIQSARGKSTISSLLLSTFSNNTSSSSNDTPTINGTAQSKKKSNFSAATLRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRATSGGKNKTFHGGILEGSNPGCVDFQDVWCGPGIGFSADTAASVDCVVARKNVSARGKIDVDKITHRERSSYAGRRTETYTFLDTDSDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKARLQIWDDTSKHQIDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWLSQKNFCPVCKQQVAARH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3346 375 MobiDBLite consensus disorder prediction 64 85 - -
Pvu2g3346 375 Pfam Ring finger domain 325 368 IPR001841 -
Pvu2g3346 375 SUPERFAMILY RING/U-box 326 372 - -
Pvu2g3346 375 MobiDBLite consensus disorder prediction 117 142 - -
Pvu2g3346 375 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 7 375 - -
Pvu2g3346 375 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Pvu2g3346 375 MobiDBLite consensus disorder prediction 121 136 - -
Pvu2g3346 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 374 IPR013083 -
Pvu2g3346 375 SMART ring_2 327 367 IPR001841 -
Pvu2g3346 375 CDD RING-H2_PA-TM-RING 326 368 - -
Pvu2g3346 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 375 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3346 Pvu-Chr2 48389044 48393168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3346 12 282 C3H Transcription Factor Family AT1G73760 40.411 3.57e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3346 - - gmx:100788837 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g1624 4 43503036 43506578 Pvu2g3346 2 48389044 48393168 ECH
Pvu2g3346 2 48389044 48393168 Pvu2g3346 2 48389044 48393168 ECH