LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g3340	ATGGGGAAACATGACTTGGGTGGTTTTGGAGCTCCTTTCTTTTATGATTTTCTATTTCTTCTCTCTTTTCTTGTTATCTCAACTAGGTGCCAAGATGCAGAGATTATAGGAATTCTGAAGAACACAATCAATGTTCCTGTTAGCTTCGAATGGACAGGTCAAGATATATGCAAATGGAAACACATTGTGTGTGATGTATCAAAACGTGTGAAAGCCATTCAAATTGGGAATCAAAACCTTCAGGGAACTCTCCCCAAAGAGCTTGTGATGTTGACAGCATTGACACGTTTTGAGTGTCAGGGCAATAGTCTCACAGGGTCATTCCCCTACCTCTCAAAATCCTTGCAGAAGTTCATCATCCATGACAACAACTTCAACTTGTTCCCCCAAGATTTCTTCAAGGGCATGAGCAGTTTGCAAGAGGTGAGAATTGATGACAACCCCTTCTCTCAATGGAACATTCCCAGCAGTCTCAAAGACTGTGTAGCACTCCAAATTTTCAGTGCTCAAAGTGCTGGTATTTCTGGGACAATCCCTGACTTTTTTGGTAGAGATGGTCCCTTTGCAGGTTTGGTTTTCTTAGCTTTATCTGATAATTTTCTAGAAGGTCCATTGCCTGCAAGCCTCTCAGATAGTTCAATAGAGAATCTTTTGGTGAATGGACAGAATAGCAACTCTAAACTCAATGGCACTCTTTGGGTGCTACGCAGAATGAGATCATTGAAACAAATTTGGGCTAATGGGAATGCCTTCACTGGTCCTATACCAAATTTGCAACAACATGATCAACTTTATGATGTGAACTTAAGGGATAACCAATTAACTGGTGTTGTTCCACCCTCCTTGGTTGCTCTACCAAATTTAAAGTTTGTGAATTTAACCAATAATCTTCTCCAAGGGTCCCCTCCTAGGTTCAAAATTGGGGTAGGAGTTGACAATAACATGGATAAAGGGAGGAACCAATACTGCACAAATGTGGCAGGACAACCATGTAGTCCCCTTGTAAATCTTTTACTATCTATTGTTGAACCTTTAGGGTATCCTCTGAAACTTGCTCAAAGTTGGCAGGGGAATGATCCATGTGCTAATAGGTGGACAGGTATAGTTTGCTCAGGGGGAAATGTTTCAGTTATCAACTTTCAAAACATGGGTTTGTCTGGCACTATTTGTCCATGTTTTGCAAGCCTTACTTCAGTAACAAAAATATTTCTTGCTAACAATGATATCACAGGTACTGTGCCAAATGAACTTGCTAGTTTGCCTAATTTGCAAGAGTTAGATGTTTCAAATAACCATTTATATGGCAAAGTGCCATCGTTTCCTAAAGATGTGGTTTTTAGATATGAAGGGAATCCAGATATTGGAAAGAAAGTGCAACAAACTCAGACAAGTTCTAAAGGCAATGGAAATAATAGCAGCATTGCAGTGATTATTGGAGTTATAGTGATTGTTGCTATTTTACTTGTTGTTGTTGTTGGGGTTCTATTACTTGTTAAGTTTAGGAGAAAGGGGAAGTATGCTGGTAAGCTTCAAAACTTGACCACAGCTTTGGTACCTCCTCATTATGGGGATGGAAATGCTGCAAAGATAAGTGGTGGAGGTCATGGAGAAGGAAATGTTAGCTCATTGTTAAGTCCTACACACAGTGTTTACCAAGGAGAAGCTAGTAACATGTTGATTTCAATTCAGATTTTGAGAGAAGTAACCAACAATTTTAGTGAGGAAAACATATTGGGAAAAGGGGGATTTGGCACTGTGTACAAAGGGGAATTGCATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCAGCAGGATTAGTGGATCAAAAGGGGTTGAGTGAGTTCACAGCTGAGATTGCTGTGCTCACCAAGGTTAGACACAAAAATTTGGTTGCTCTCTTGGGGTTTTGCTTAGATGGGAATGAGAGACTTCTTGTGTATGAATGCATGCCCCAGGGTGCTCTTAGTAAGCATTTGGTTGATTGGAAAGAAGCAGGGTTGAAACCACTTGAATGGAAAACAAGACTTAGTATAGCCCTGGATGTTGCTAGAGGTGTTGAGTATCTTCATGGTTTGGCACAACAAATTTTTATTCATAGGGATCTCAAACCATCCAATATTTTGCTTGGAGATGATATGCATGCCAAGGTATCAGACTTTGGATTAGTTAGACTTGCTCCTGAAGGGAAAACCTCGTTTCAAACTAGATTGGCAGGAACTTTTGGGTACATGGCACCAGAGTATGCAGCTACTGGGAGACTTACAACAAAGGTTGATGTGTATAGTTTTGGAGTGATTCTGATGGAGATGGTAACAGGAAGAAAAGCACTTGATGACAGCCTACCAGAAGAGAACATCCACCTTGTTACATGGTTCAGAAAGATGCTGACAAACAAAGATTCATTCCCAACAATCATTGACCCAACAATCAAACTTGATGAGGAAACATTAGTTAGTGTGAACACTGTTGCAGGGTTAGCAGGGCATTGTTGTGCAAGAGATCCTTACCAACGGCCTGATATGAGTCATGTAGTGAATGTGCTGTCACCTCTTGTGCAAGTGTGGAAGCCATTAGAACCAACTGTTGATGAAATTTATGGAATTGACTTTGATATGTCATTGCCTGAAGCACTCCAAATGTGGAGACATTTTGAGGGAAGTGACAACACCTTTGACTTAACTTCTTCATCAACACATGTTAATGGAAACAATGCAAAATCTTCTGTAAGTGCAACTCTTTCACATGCACAGTGA	2757	0.4033	MGKHDLGGFGAPFFYDFLFLLSFLVISTRCQDAEIIGILKNTINVPVSFEWTGQDICKWKHIVCDVSKRVKAIQIGNQNLQGTLPKELVMLTALTRFECQGNSLTGSFPYLSKSLQKFIIHDNNFNLFPQDFFKGMSSLQEVRIDDNPFSQWNIPSSLKDCVALQIFSAQSAGISGTIPDFFGRDGPFAGLVFLALSDNFLEGPLPASLSDSSIENLLVNGQNSNSKLNGTLWVLRRMRSLKQIWANGNAFTGPIPNLQQHDQLYDVNLRDNQLTGVVPPSLVALPNLKFVNLTNNLLQGSPPRFKIGVGVDNNMDKGRNQYCTNVAGQPCSPLVNLLLSIVEPLGYPLKLAQSWQGNDPCANRWTGIVCSGGNVSVINFQNMGLSGTICPCFASLTSVTKIFLANNDITGTVPNELASLPNLQELDVSNNHLYGKVPSFPKDVVFRYEGNPDIGKKVQQTQTSSKGNGNNSSIAVIIGVIVIVAILLVVVVGVLLLVKFRRKGKYAGKLQNLTTALVPPHYGDGNAAKISGGGHGEGNVSSLLSPTHSVYQGEASNMLISIQILREVTNNFSEENILGKGGFGTVYKGELHDGTKIAVKRMQSAGLVDQKGLSEFTAEIAVLTKVRHKNLVALLGFCLDGNERLLVYECMPQGALSKHLVDWKEAGLKPLEWKTRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMHAKVSDFGLVRLAPEGKTSFQTRLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMVTGRKALDDSLPEENIHLVTWFRKMLTNKDSFPTIIDPTIKLDEETLVSVNTVAGLAGHCCARDPYQRPDMSHVVNVLSPLVQVWKPLEPTVDEIYGIDFDMSLPEALQMWRHFEGSDNTFDLTSSSTHVNGNNAKSSVSATLSHAQ*	919

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g3340	918	Gene3D	Phosphorylase Kinase; domain 1	541	649	-	-
	Pvu2g3340	918	SUPERFAMILY	L domain-like	31	305	-	-
	Pvu2g3340	918	Pfam	Leucine rich repeat N-terminal domain	39	65	IPR013210	-
	Pvu2g3340	918	Pfam	Leucine rich repeat N-terminal domain	341	371	IPR013210	-
	Pvu2g3340	918	Gene3D	Ribonuclease Inhibitor	334	458	IPR032675	-
	Pvu2g3340	918	SMART	serkin_6	572	853	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu2g3340	918	Gene3D	Ribonuclease Inhibitor	31	329	IPR032675	-
	Pvu2g3340	918	SUPERFAMILY	Protein kinase-like (PK-like)	560	884	IPR011009	-
	Pvu2g3340	918	MobiDBLite	consensus disorder prediction	896	918	-	-
	Pvu2g3340	918	Pfam	Leucine rich repeat	393	433	IPR001611	GO:0005515
	Pvu2g3340	918	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	698	710	IPR008271	GO:0004672\|GO:0006468
	Pvu2g3340	918	ProSiteProfiles	Protein kinase domain profile.	572	853	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu2g3340	918	PANTHER	TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED	17	912	-	-
	Pvu2g3340	918	CDD	STKc_IRAK	578	852	-	-
	Pvu2g3340	918	PANTHER	OSJNBA0070M12.3 PROTEIN	17	912	-	-
	Pvu2g3340	918	Gene3D	Transferase(Phosphotransferase) domain 1	651	859	-	-
	Pvu2g3340	918	Pfam	Protein kinase domain	573	847	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu2g3340	918	SUPERFAMILY	L domain-like	337	440	-	-
	Pvu2g3340	918	ProSitePatterns	Protein kinases ATP-binding region signature.	578	600	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g3340	Pvu-Chr2	48327667	48331392	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu2g3340	72	849	Receptor kinase-like Gene Family	AT5G07280	31.205	2.87e-81	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Pvu2g3340		Pkinase	2.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g3340	-		K00924	gmx:100788903	1371.68