Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3330 ATTTATGTCATCGTTTTCTCCCAAGACTATGCATCTTCCACTTGGTGCTTGAATGAACTCACTAAGATACTTGAATGCAAGAAGAGATTTGGAAGGGATGTCATACCTGTTTTCTACAAGGTGGATCCATCAACTATTAGGAAGCAGGAACAAAGATACAAAGAAGCATTCGAAAAGCATGAGCAGCACTTTAAGCACGATAAAGTGCAAGGATGGAAGGATGCTCTCACCGAAGCTGCTGAACTTGCAGGCTGGGATTCAAAAGTCACCAGGTCACGCACTTTCCAGATAATCAGGATCTCTTTTCATTTACTAAAATTGTCACAGAACACACACTTGTTGAAAAAATTGAATCGTTATTCCATCAGTTATGATCAAGGAATCATCGGCATTGAAAAACATATTGAAGGAATTCAGTCCTTGTTGCATCTTGAGTCACCGGATGTTCGGATCATAGGAATTTGTGGCATGGGAGGAATAGGAAAAACTACAATTTGTAATCAAATATATCACAAATTGGCATTGCAGTTTGATTCCAGCAGCCTTGTTTTAGACGTTCAAGAAAAAATACAAAGAGATGGAATAGACAGTATCAGAACAAAATATCAGTCTGAGCTTCTAAAGGAAGAGAAATCCTCTTCTTCACCATATTACAATGAAAGGCTCAAACGGACAAAGGTTCTCCTCATTCTTGATGATGTTACCGATTCAGCTCTAATAAAGTTTGCTAACTGTACCTCTCTATGTGGAGGACGTATTGTATTTATAATTAAAGAAAG 779 0.38 IYVIVFSQDYASSTWCLNELTKILECKKRFGRDVIPVFYKVDPSTIRKQEQRYKEAFEKHEQHFKHDKVQGWKDALTEAAELAGWDSKVTRSRTFQIIRISFHLLKLSQNTHLLKKLNRYSISYDQGIIGIEKHIEGIQSLLHLESPDVRIIGICGMGGIGKTTICNQIYHKLALQFDSSSLVLDVQEKIQRDGIDSIRTKYQSELLKEEKSSSSPYYNERLKRTKVLLILDDVTDSALIKFANCTSLCGGRIVFIIKE 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3330 259 Pfam NB-ARC domain 132 239 IPR002182 GO:0043531
Pvu2g3330 259 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 237 IPR044974 GO:0006952
Pvu2g3330 259 PRINTS Disease resistance protein signature 151 166 - -
Pvu2g3330 259 PRINTS Disease resistance protein signature 221 235 - -
Pvu2g3330 259 Gene3D - 114 256 IPR027417 -
Pvu2g3330 259 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 85 IPR035897 -
Pvu2g3330 259 ProSiteProfiles TIR domain profile. 1 108 IPR000157 GO:0007165
Pvu2g3330 259 Pfam TIR domain 2 99 IPR000157 GO:0007165
Pvu2g3330 259 Gene3D - 1 113 IPR035897 -
Pvu2g3330 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 253 IPR027417 -
Pvu2g3330 259 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3330 Pvu-Chr2 48249092 48250076 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3330 12 236 WRKY Transcription Factor Family AT4G12020 29.185 2.24e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3330 - - pvu:PHAVU_002G3235000 492.656