Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3320 ATGGTGAAATCGAACGAAAACGGTTCCGCTTCGGTTCCTCCGTTCTTGAAAAAATGTTACGATATGGTGGAAGACCGGAGCACGGACTCCGTTATCCGTTGGAGCGACGCCGGTGACAGTTTCGTCATCTCCAACACCACTCAATTCTCCGTCACGCTGCTTCCTACCTATTTCAAACACAACAATTTCTCCAGTTTTATTAGACAACTCAATATTTATGGTTTCAGGAAAATTGATACAGATTGCTGGGAATTTGCCAATGAAAACTTTGTTAGGAATCAAAAGCAATTGTTGAAGAATATACGCAGAAGAAAACATCCACACATTGCAGATCAACAAAAAGCATTGCCTCTGAATGACAATTGTGATGAACCACCCCAAGAGGCACCGGATCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCGCTTACCCAGGAGTTGGTCAAACTCAGGCAACACCAGGAATCTGCTGAGAGCAATTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAACAGATGTTATCATTCTTAGTCATGGTGGTGCAAAGCCCTGGGTTCCTGGTTCAATTGCTTCATCCCAAGGAAAATAATTGGCGTTTGTCTGAATCATGGAATATATTAGATCAAGATAAACAAGATGACAAGCCAATTGCTTCTGATGGGATGATAATAAAGTATAAGCCTCCTGTAAGTGAAAAACTCAAGCCTGTAGTTCCTCTATCTCCTGCTTTCGAAAAAGAACCCGAGCTCTCTGCAGATGGGCTAAAAGACTTGTGCATTAGTGCTGACTTCATGAAAGTGCTTCTGGATGAAAAACTGTGTCCATTAGAAAGTCATTCTCCATTTCTCCTACCAGATTTACCTGATGACGGTTCATGGGAACAGCTTTTTCTAGGCAGTTCTTTCCTGGGAAACATTGAAGATTCTAGTAAAGAAAGTGAGGGGCACACGGATAGTGGAATGGAAATTGAACCGACAATATCAGATATTCCTGATGAAAATTCTCGAGCTTTTGAATCGATGGTTGTAGAGATGGAGAGAACTCGAGAATGA 1083 0.4183 MVKSNENGSASVPPFLKKCYDMVEDRSTDSVIRWSDAGDSFVISNTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRNQKQLLKNIRRRKHPHIADQQKALPLNDNCDEPPQEAPDHGLWKEVENLKSDKNSLTQELVKLRQHQESAESNLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFLVQLLHPKENNWRLSESWNILDQDKQDDKPIASDGMIIKYKPPVSEKLKPVVPLSPAFEKEPELSADGLKDLCISADFMKVLLDEKLCPLESHSPFLLPDLPDDGSWEQLFLGSSFLGNIEDSSKESEGHTDSGMEIEPTISDIPDENSRAFESMVVEMERTRE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3320 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 342 IPR027725 -
Pvu2g3320 360 MobiDBLite consensus disorder prediction 317 345 - -
Pvu2g3320 360 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g3320 360 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g3320 360 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 342 - -
Pvu2g3320 360 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Pvu2g3320 360 Coils Coil 138 165 - -
Pvu2g3320 360 Gene3D - 7 105 IPR036388 -
Pvu2g3320 360 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g3320 360 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g3320 360 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu2g3320 360 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3320 Pvu-Chr2 48161637 48164747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3320 12 310 HSF AT1G67970 49.007 1.36e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu2g3320 HSF_DNA-bind 1.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3320 K09419 - gmx:100813694 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3320 2 48161637 48164747 Pvu2g3320 2 48161637 48164747 ECH