Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3316 ATGGCCGAAAATTCTTCTCCTGCAATCGACACTCACCGCACACTTCGATTCTCATCAATGCTTAATGTTCTTGTCATTGACACAAACCTCAGTGTTCTTGAATACATCAAGCAAGCATGCACCCACTATTCCTATCAAGTTATACCATGCTCTGAATCTCTGTCTGCTGCCAATTTTTTGCGGGAAAGAAAGGAGCTCATTCATCTCATACTCATTGAGGCTCACATGCCATTGATGGATGGCTATGAATTCCTGCAATTCGTCAAACAAGAACAGATCAATGTTCCTCTCATCATGATGTCCACCGATGATAGTGATGCTTCCGTTATGAATGCCATTGAAGTTGGAGCTTGTGATTATTGGATCAAACCCTTGGAAAAGAATCGGATCGTGAGTATGTGGACACATGTTGTGAAGAACAGCATGAGTAAAGATAAGAAGCGAAAAGATATTGGTTGCCAGAAAGATTATGACAGAACAAGAGTGATGAGGTATAATTCTGAATTTGCTTCATCTCTGGTTGATTTTGATGTTGATGAATCAAAGAATGCTAATCCACCCTCAAGAAAGACGAAGCGCGTAGTATGGTCAACAGAACTGCATGATTTGTTTCTCAATGCCATGAAGAAAGCTGGAGAAGAAGCTATGAACGTTCCAGGTTTGGAAAGAGGACATGTTGCAAGTCATCTTCAGAAACACACAAAATCTTTGACAGAGAAGCAACAGAAGGAGATGTCGTTGGCTTCATGGAACACAGAACCTGAAAGAATCCACCTGCAATCTTCTACTTCACTCACAGATTTTCATCATCCTGGTTTCACAGGCAACATGGGACCAAAAGGAGAGCAACATTTTCATGCAGAAGAAGCTTTGGCACATCATCATCATCCTCTTTTAGCAACCTTTTCTAACATGGCCATTGCTGAGAATTCTCCACAGTTCATGAGAAATATCAGGCAGCAGTATCATCATAAAATTCATCCAATCAACTTTGACTACAACTCTGGCATCAACATGGATAATGGGTTAGCATCACTACAATCAATCAAAGGTGGAAACAACATGGGTGAAGTGATTCTGAATCAAGATACTACTAAAGCTTCTGTTTATCACCCACAAAGTCAAAACGCAGGTTTGTCAAGTTGTGCTGTGAGATCTTCTGATGCAATAGATATTGATGATGCAACAAGTGAGGAGCAACTAATTCTATCAACAATGGAGTAA 1224 0.4036 MAENSSPAIDTHRTLRFSSMLNVLVIDTNLSVLEYIKQACTHYSYQVIPCSESLSAANFLRERKELIHLILIEAHMPLMDGYEFLQFVKQEQINVPLIMMSTDDSDASVMNAIEVGACDYWIKPLEKNRIVSMWTHVVKNSMSKDKKRKDIGCQKDYDRTRVMRYNSEFASSLVDFDVDESKNANPPSRKTKRVVWSTELHDLFLNAMKKAGEEAMNVPGLERGHVASHLQKHTKSLTEKQQKEMSLASWNTEPERIHLQSSTSLTDFHHPGFTGNMGPKGEQHFHAEEALAHHHHPLLATFSNMAIAENSPQFMRNIRQQYHHKIHPINFDYNSGINMDNGLASLQSIKGGNNMGEVILNQDTTKASVYHPQSQNAGLSSCAVRSSDAIDIDDATSEEQLILSTME* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3316 407 Gene3D - 19 156 - -
Pvu2g3316 407 SUPERFAMILY CheY-like 19 146 IPR011006 -
Pvu2g3316 407 Pfam Response regulator receiver domain 23 133 IPR001789 GO:0000160
Pvu2g3316 407 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Pvu2g3316 407 SMART REC_2 21 134 IPR001789 GO:0000160
Pvu2g3316 407 Gene3D - 188 239 - -
Pvu2g3316 407 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 385 IPR045279 GO:0009736
Pvu2g3316 407 SUPERFAMILY Homeodomain-like 190 237 IPR009057 -
Pvu2g3316 407 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 192 233 IPR006447 GO:0003677
Pvu2g3316 407 CDD REC_typeB_ARR-like 23 138 - -
Pvu2g3316 407 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 18 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3316 Pvu-Chr2 48128528 48130098 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3316 16 295 Response Regulator Gene Family AT4G31920 29.492 2.09e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu2g3316 Response_reg 3.1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3316 - K14491 pvu:PHAVU_002G322000g 612.068