Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3313 ATGGCCCAAATTTCTTCTCCTGCAATCGCCACTCAGCACACACTTCCAGTCTCACCAATGCTTAATGTTCTTGTCATTGACAGTGACCTCAGTGTTCTTGAATACATCACCAAAGCATGCACCCACTCTTCTTATCAAGTTATACCATGCTCTGAATCTCTGCCTGCTGCCAATTTTTTGCGGGAAAGAAAGGAGCTCATTCATCTCATACTCATTGAGGTTCACATGCCATTGATGGATGGCTATGAATTCCTGCAATTCGTCAAACAAGAACAGATCAATGTTCCTCTCGTCTTGATGTCCACGGATAATAATAATGCTTCTGTGATGAAGGCCATTGAAGTTGGAGCTTGTGATTATTGGAACAAACCCTTGGAGGAGAAAAGGATCGTGAATATGTGGGCATATGTTCTGAAGAGCAGCACGAGTGAGGATACGAAGCAAAAAGATATTGGTAGCCAGAAAGATGATGACAGAAGAAGAGTGAAGAGTGATAATTCTGAATTTGCTTCATCTGTTGTTGATTTTGATGTTGGTGAATCAAAGAATGCTAATCCACCCTCAAGAAAGAAGAAGCGCATAGTATGGTCAACAGAACTGCATGAGTTGTTTCTCATTGCCATGGACAAAGCTGGAGGGGAAGATGCCGTGCCCAAGAAAATTCTTGAAGCTATGAACGTTCCAGGTTTGGAAAGAGGACACGTTGCAAGTCATCTGCAGAAACACAGAAAATATTTGAGAAAGAAGAAAGAGATGGAGATGTCATTGGCTTCAGGGAACACAGAACCTGAAAGAATCCACTTGCAATCTTCTACTTCACTCACAGATTTTCATCATCCTGGTTTCACAGGCAACATGGGACCAAAAGGAGAGCAACATTTTCCTGCAGAAGAAGCTTTGGCACATCATCAAAATTCTCCTTTAGCAACCTTTTCCAACATGGCCATGGCTGAGAATTCTCCACTGTTCATGAGAAATATTATGCAGCAGTATCATCATCAAATTCATCCATTCAACTTTCACTCATCTTCCATCACAATTTCCGGAAATCCAGCTTTTGTTCCCCAGAATTACAACTCTGGCATCAACATGAATAATGGGTTAACATCACTCCAATCAATCCAAGGTGGAAACAGCATAGGTGAAGTGATTCAGAATCAAGATACTACTGGAGCTTCTGTTTATTACCCACAAAGTCAAAATGCAGGTTTGTCAAGTTATGCTGTGAGATATTCTGATGCAACTGAGTTCAGCAGCCAAAGTCTCTCCACAGATATTGATAATGCAACAACTGAGGAGCAGCTAATTCTATTAACAATGGATGAAAGCATCACAAGGCCTGCGTCTTAA 1350 0.4133 MAQISSPAIATQHTLPVSPMLNVLVIDSDLSVLEYITKACTHSSYQVIPCSESLPAANFLRERKELIHLILIEVHMPLMDGYEFLQFVKQEQINVPLVLMSTDNNNASVMKAIEVGACDYWNKPLEEKRIVNMWAYVLKSSTSEDTKQKDIGSQKDDDRRRVKSDNSEFASSVVDFDVGESKNANPPSRKKKRIVWSTELHELFLIAMDKAGGEDAVPKKILEAMNVPGLERGHVASHLQKHRKYLRKKKEMEMSLASGNTEPERIHLQSSTSLTDFHHPGFTGNMGPKGEQHFPAEEALAHHQNSPLATFSNMAMAENSPLFMRNIMQQYHHQIHPFNFHSSSITISGNPAFVPQNYNSGINMNNGLTSLQSIQGGNSIGEVIQNQDTTGASVYYPQSQNAGLSSYAVRYSDATEFSSQSLSTDIDNATTEEQLILLTMDESITRPAS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3313 449 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 418 IPR045279 GO:0009736
Pvu2g3313 449 MobiDBLite consensus disorder prediction 145 164 - -
Pvu2g3313 449 SUPERFAMILY Homeodomain-like 189 248 IPR009057 -
Pvu2g3313 449 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 191 244 IPR006447 GO:0003677
Pvu2g3313 449 SUPERFAMILY CheY-like 19 142 IPR011006 -
Pvu2g3313 449 Pfam Response regulator receiver domain 23 133 IPR001789 GO:0000160
Pvu2g3313 449 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 18 418 - -
Pvu2g3313 449 ProSiteProfiles Response regulatory domain profile. 22 138 IPR001789 GO:0000160
Pvu2g3313 449 Gene3D - 19 159 - -
Pvu2g3313 449 Gene3D - 188 249 - -
Pvu2g3313 449 SMART REC_2 21 134 IPR001789 GO:0000160
Pvu2g3313 449 CDD REC_typeB_ARR-like 23 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3313 Pvu-Chr2 48115419 48117115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3313 21 279 Response Regulator Gene Family AT2G25180 32.727 7.57e-39 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu2g3313 Response_reg 8.8e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3313 - K14491 pvu:PHAVU_002G322000g 896.73