Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3309 ATGGTGACAAGAAGAAAGCTCCTGAATTTGTTATCAACCCTAAAAGTTTCTGACCTAATTCATCACCACGCCAATGCATTTAACCCTTTTTCCAAAACCCCCAAAACCCTCAGGGTTCACTACGGAACCCAATCATCGAAACTCCCCGAATACGAGATGCCATCGGTAACATGGGGCGTGATTCAAGGTCGCAAGGAGAAGCTCGTTTCGCGAGTAATCATCTTCGACTACCTCAAGGGTTTGGGAATCATCCCCGACGAGTTACACGACCTCGAACTTCCCTCCACCGTCGACGTCATGCGCGAGCGTGTCGAGTTTCTCCAAAAATCAGGTCTAACCGTCGACGATATCAACAATTACCCTTTGATCTTAGGTTGCAGTGTCAGAAAAAACATGATCCCCGTGTTGGGGTACTTGGAAAAAATTGGGATTGCAAGGCCCAAGCTTGGGGAGTTCGTGAAGAATTACCCGCAGGTGTTGCATGCTAGTGTCATTGTTGAGCTTGTTCCTGTTGTTAAGTTCCTCAGGGGCCTTGATGTGGAGAAAGATGATATTGGGTATGTGTTGCAAAAGTACCCTGAACTGCTTGGGTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATAGGTCCAATGGTTACTCAGTATCCTTATTTGTTAGGGATGAGAGTTGGGACTGTGATAAAGCCCATGATTGATTACTTGGTGGGTTTAGGGCTGCCGAAGAAGGTTTTGGCTAGGATGTTGGAGAAGAGAGCTTATATTCTTGGCTATGATCTTGAGGAAACTGTGAAACCAAATGTGGAATGTTTGATGAGTTTTGGTGTTCGAAGGGAGTGGTTGGCTTCGGTTATTGCTCAATATCCGCAGATTCTTGGGCTGCCTCTGAAGGCTAAGTTGTCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGATCCTGAAGGGTTTGCACGAGTGGTGGAGAACATGCCACAGGTAGTTAGCCTCAACCAGCATGTGATTATGAAGCCCGTTGAGTTCCTCCTTGGAAGGACTATAACAGTGGAGGATGTGGCTAGAATGGTGATCAAGTGTCCTCAGTTGGTGGCGTTGAGAGTTGAGCTGATGAAAAACAGCTTTTACTTCTTTAAGAGTGAGATGGGGAGGCCCTTGAAAGAGCTTGTGGAGTTCCCTGAGTACTTTACTTATAGTTTGGAGTCTAGGATCAAACCCAGATACCAGAGGCTCCAGAGTAAGGGGATAAGGTGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAAAGTTTAGGTCCCAGATTCTGCATGGGAGGGAAATTGGAGCTACCAGGGAATGATATAGTGTCAGATGAGGAAGCTGAGAGTGATGATGATGAACTATTATACAGACGAACTGTTTCCCTATAG 1488 0.4563 MVTRRKLLNLLSTLKVSDLIHHHANAFNPFSKTPKTLRVHYGTQSSKLPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKSGLTVDDINNYPLILGCSVRKNMIPVLGYLEKIGIARPKLGEFVKNYPQVLHASVIVELVPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPMIDYLVGLGLPKKVLARMLEKRAYILGYDLEETVKPNVECLMSFGVRREWLASVIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLNQHVIMKPVEFLLGRTITVEDVARMVIKCPQLVALRVELMKNSFYFFKSEMGRPLKELVEFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWMLNCSDQRFEERLQGHYIETESLGPRFCMGGKLELPGNDIVSDEEAESDDDELLYRRTVSL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3309 495 Pfam mTERF 136 444 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 PANTHER CGI-12 PROTEIN-RELATED 35 477 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 Gene3D Transcription termination factor 3, mitochondrial 100 240 IPR038538 -
Pvu2g3309 495 Gene3D Transcription termination factor 3, mitochondrial 241 454 IPR038538 -
Pvu2g3309 495 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 SMART mt_12 331 361 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 SMART mt_12 366 397 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 SMART mt_12 294 326 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Pvu2g3309 495 PANTHER EXPRESSED PROTEIN 35 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3309 Pvu-Chr2 48087876 48089363 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu2g3309 mTERF 4e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3309 K15032 - gmx:100809590 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3309 2 48087876 48089363 Pvu4g1619 4 43430817 43433146 PCT