Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3275 ATGCCAGGCCTCACCATTCAGATCACTCAAACCTTTCCCTCCAGCCATCCAACTATGACCACCCCTTCCTCCTTCCTTGCATCCATACTCGCCCTTGCTTTCTTCTTAGCAACTTTGCCACAATCCTACTCTCAACAAAACAACACCTACGCCACTTGCAGCCAATCTTTCAGCTGTGGAACTCTCACAAACATATCCTATCCTTTCTGGGGAGGGAACCGACCTCAGTTTTGTGGCCGGAATGGTTTCAAGCTCACGTGCATGCATGACCAAAACACTTCGCTTCAAGTTGGTTCCCAAAACTTCCATGTACTGCACATCAACCAAACGGCTTCCACCATGAGAATGGTGCGAACAGACCTTGTCTATGATAGCTGCTCTTCCAATTTCACCAACACTTCACTCAGTTCCAGTCCCTTTTCTTTTCTCCCCACCGTTCAGAATGTCACTGTATTCTACGAATGCCCCTCTCAGAATTCTGTTGGGGGAAACACTTTTACGTGTCGGAATGATACTAATAAACACGCTTTCTATGCGGTCAATGAAACTCAGCTGAAGCAGCTTCAGAACTGCGGGGTTAGCGTTATGGTGCAAGTCTCACAGGGTGTTGTTTGGGATTCTGAGAACGGAATAGATGCGCTGAAGAAAGCGTTGGATCAAGGATTTGATGTGAAGTTTGATGCAGAGTGGACTTCTCAGTGCACAGCATGCAGGGATTCTGGAGGAGCATGTGGAACAAACGAGAAGAACTCCGATCAGTTTTCATGTTATTGCTCAGATGAAACTCATGGTTCAGTGTGCTCTACTCACAAAAGTGGCAGGAATAGCAGAGTGTTGAAGCTGGTTTTAGGTTTCGTTGGTACTGGATTTGCACTACCTCTAATCGCTGTCATCATATGCCGCAACAAAGCTAGAATTTGGAAATTTATATTAATACAATTGGGCAAGGTAAAGAAGAATGATCGATTTATAGAAGCCTTCATTGAAAGCCAAGGTTCTATGGGTATAAAGAGATACAGTTTCTCTGAGATCAAGAAAATGACCAACTCCTTCAAAGTTAAACTGGGGGAAGGTGGTTATGGATCTGTATACAAAGGAAAGTTACTCAGTGGTGGTTCTGTGGCAGTGAAAATACTGAACGAGTCAAAGGATAATGGCGATGAGTTTATCAATGAGGTTGCTAGCATAAGCAAAACATCCCATGTTAACATTGTCTCTCTCCTTGGATTTTGCCTAGAAGGAAGCAGAAAAGCCCTGGTCTATGAGTTTATGTCCAATGGTTCACTCGAGAAGTACATTCACAAAAAAGCAGCAGAAGAAAATAAAACTACCACTCCACCTTTGGGTTGGGACAGATTGAACCAGATTGCAATAGGCATAGCTCGAGGACTTGAGTATTTGCACAAAGGATGCAACACTCGGATTCTGCATTTTGACATTAAGCCACATAACATCCTTTTGGACGAAACTTATCGCCCAAAGATATCAGATTTTGGACTTGCTAAGCTGAGCACAAGAGATGAAAGCATTGTATCAATGTCAAATGCTAGAGGGACAATAGGGTATGTGGCTCCTGAAGTGTTCAACAAAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTGCTAGAAATGGTTGGAGGACAGAAGAACATCAATGTTGAAGCTAGTCGCTCAAGCGAACTATATTTCCCACACTTGGTTATTTACAAGAAGCTTGAGCAGGGAAATGATTTGGGACTTGATGGGATATTGTCTGGTGAGGAAAATGAGATAGCAAAGAGAATGACTATGGTGGCTCTGTGGTGCATTCAGACAATTCCTTCTCACAGACCTACCATAAGTACAGTGATTGACATGTTGTTAGGTAGTGCAGATTCTTTGGAAATGCCACCAAAACCTTTCCTCTCTTCTCCTCCAAGACCAACAGCTTTTTCCTCTGCAATGTCCGAATCATTTGATAGTGTCTCATGCAGCTTATAG 2001 0.4323 MPGLTIQITQTFPSSHPTMTTPSSFLASILALAFFLATLPQSYSQQNNTYATCSQSFSCGTLTNISYPFWGGNRPQFCGRNGFKLTCMHDQNTSLQVGSQNFHVLHINQTASTMRMVRTDLVYDSCSSNFTNTSLSSSPFSFLPTVQNVTVFYECPSQNSVGGNTFTCRNDTNKHAFYAVNETQLKQLQNCGVSVMVQVSQGVVWDSENGIDALKKALDQGFDVKFDAEWTSQCTACRDSGGACGTNEKNSDQFSCYCSDETHGSVCSTHKSGRNSRVLKLVLGFVGTGFALPLIAVIICRNKARIWKFILIQLGKVKKNDRFIEAFIESQGSMGIKRYSFSEIKKMTNSFKVKLGEGGYGSVYKGKLLSGGSVAVKILNESKDNGDEFINEVASISKTSHVNIVSLLGFCLEGSRKALVYEFMSNGSLEKYIHKKAAEENKTTTPPLGWDRLNQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSTRDESIVSMSNARGTIGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGQKNINVEASRSSELYFPHLVIYKKLEQGNDLGLDGILSGEENEIAKRMTMVALWCIQTIPSHRPTISTVIDMLLGSADSLEMPPKPFLSSPPRPTAFSSAMSESFDSVSCSL* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3275 666 Gene3D Transferase(Phosphotransferase) domain 1 424 636 - -
Pvu2g3275 666 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Pvu2g3275 666 Pfam Wall-associated receptor kinase C-terminal 171 260 IPR032872 -
Pvu2g3275 666 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 662 IPR045874 GO:0004672
Pvu2g3275 666 CDD STKc_IRAK 355 627 - -
Pvu2g3275 666 ProSiteProfiles Protein kinase domain profile. 349 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3275 666 Pfam Protein kinase domain 352 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3275 666 SMART serkin_6 349 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3275 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Pvu2g3275 666 SUPERFAMILY Protein kinase-like (PK-like) 336 660 IPR011009 -
Pvu2g3275 666 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 15 662 - -
Pvu2g3275 666 Pfam Wall-associated receptor kinase galacturonan-binding 53 118 IPR025287 GO:0030247
Pvu2g3275 666 Gene3D Phosphorylase Kinase; domain 1 325 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3275 Pvu-Chr2 47839341 47843067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3275 32 657 Receptor kinase-like Gene Family AT5G38260 40.528 1.48e-149 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu2g3275 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3275 - - vra:106766588 1185.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3275 2 47839341 47843067 Pvu4g1644 4 43728170 43734811 PCT
Pvu4g1647 4 43761745 43766476 Pvu2g3275 2 47839341 47843067 PCT