Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3261 ATGGCCCAATTCACTGCACATTTCCAAAGCTTTAGACCCTCTTTTCCTTTCTTAGATATCGATAACATGGAAATTCAAAACTTGCTGCCATTTGATGACACCTTATTGGCCTCTCCAGAACCTCAATTTCCACCAAACTTGGAAGGAAATTTTCCTGCTCCTTTTCAATGTGTGGATCACAATGCAGTTCCAGTGTTAGTTCCTATCAGTTCAAATGAAGTCCATGAAGGTAAAAAAAGGGAAGCAACTGATATGTGTGATCCCAGTTCTGGTAACTCAACTCCTGATATTTCTGAGAGTGGAAGCAACACAAAAAATAGTTCTGGAAGAGGCAAGAGAGTCAAAAGGAATGCGGTAGAAGACAAGAAACCAAACCAAGTAGTTCATGTTAGAGCCAAAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAATAATGTTGGACGAGATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCCATGAAGCTTAGTGCAGCAAGTACCTATTATGACTTCAATTCAGAGTCAGATGCTTTGGAAACAATGCAGAGAGCAAAGGCATCCGAGGCAAAAGAGTTAGGAGAAGGAAGTGAAGGAGTTTCTTGCTTTGAAGCAACATGGCCATGGTCCCTGTAA 738 0.4187 MAQFTAHFQSFRPSFPFLDIDNMEIQNLLPFDDTLLASPEPQFPPNLEGNFPAPFQCVDHNAVPVLVPISSNEVHEGKKREATDMCDPSSGNSTPDISESGSNTKNSSGRGKRVKRNAVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLSAASTYYDFNSESDALETMQRAKASEAKELGEGSEGVSCFEATWPWSL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3261 245 CDD bHLH_AtBPE_like 127 211 - -
Pvu2g3261 245 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 242 IPR024097 GO:0006355
Pvu2g3261 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 186 IPR011598 GO:0046983
Pvu2g3261 245 MobiDBLite consensus disorder prediction 86 108 - -
Pvu2g3261 245 MobiDBLite consensus disorder prediction 73 124 - -
Pvu2g3261 245 Pfam Helix-loop-helix DNA-binding domain 140 187 IPR011598 GO:0046983
Pvu2g3261 245 PANTHER TRANSCRIPTION FACTOR BEE 1 16 242 - -
Pvu2g3261 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 204 IPR036638 GO:0046983
Pvu2g3261 245 SMART finulus 142 192 IPR011598 GO:0046983
Pvu2g3261 245 Gene3D - 133 205 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3261 Pvu-Chr2 47743513 47745376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3261 7 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 51.220 7.04e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g3261 HLH 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3261 - - vun:114179606 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0987 3 19512352 19514272 Pvu2g3261 2 47743513 47745376 ECH
Pvu2g3261 2 47743513 47745376 Pvu2g3261 2 47743513 47745376 ECH