Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3253 ATGAGAGACATGAAAGACGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGATGGTTCTGTGCAGCTGATGATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCACTCCGCCAACCAGTTAGCTAGCAGACACGAAAGGGTTCGCCTTCAAACTGCATCCTCTAAGGTAGCCACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAGCAAGCACTCTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACGGCAGTGTTCTTCCCCTGGTTCCGGAGCTGGGAGGGGAAGAACAAGAAACTGTGGTTGTGGATAATGATGAGACGGAGGAACAGATGCTATGTCGTGTGCCCGTATTCGACAATTACGATGTGAGAACGGATGACTTGGACAGTTTTTCCGACATGGATTTCGCTGAGTTTGCTGCTGATGTTGAAAACCTGCTTGTTAAAGAAGACGATGAAAGAAGTGCGTGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGATATTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGAGCAATGATGATACTCTTCATTGGAATAGCATTGAGTCTGTGCTGTCAGATGCAGGGGAAGAGAAGGCATGTGTGGTGGCGAGTGATGGTGGTGTTGGTGAAGAAGAAGGAACAAAGAGAGACATATTTTTGAGACTTAACTACGATGAGGTTATAAGTGCATGGTCTACCCAAGGTTCTTCTCCCTGGACAACTTCAAACCCACCTAAGTTCAACTCCGGCTATGACTTCTGCTTGGGTCTGAGTGGTGTAGATGGGGAAGTAAGAAGCTTAAGGGGTCACCTAGACGGTGGAAGAGAAGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATTAGATATGAAGTAAGAAAGTTGAACGCAGAGAAAAGGCCAAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTTGGAGTCAATGCTTTTCCTGCTTACCAATGA 1110 0.4739 MRDMKDAGALGAKTARACDSCISRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTASSKVATTTHAWHSGFTRKARTPRHNNNSKHSALQQRLKEEVLFNNGSVLPLVPELGGEEQETVVVDNDETEEQMLCRVPVFDNYDVRTDDLDSFSDMDFAEFAADVENLLVKEDDERSACVGGGVQGAMAKVKDEEDIDGDVACYLESVFDMSNDDTLHWNSIESVLSDAGEEKACVVASDGGVGEEEGTKRDIFLRLNYDEVISAWSTQGSSPWTTSNPPKFNSGYDFCLGLSGVDGEVRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGVNAFPAYQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3253 369 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Pvu2g3253 369 SMART bboxneu5 13 60 IPR000315 GO:0008270
Pvu2g3253 369 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Pvu2g3253 369 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 362 - -
Pvu2g3253 369 CDD Bbox1_BBX-like 17 60 - -
Pvu2g3253 369 Pfam CCT motif 314 356 IPR010402 GO:0005515
Pvu2g3253 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 362 - -
Pvu2g3253 369 ProSiteProfiles CCT domain profile. 314 356 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3253 Pvu-Chr2 47675673 47677770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3253 7 356 C2C2-CO-like Transcription Factor Family AT1G25440 42.991 5.80e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu2g3253 zf-B_box 3.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3253 - - vun:114176987 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3253 2 47675673 47677770 Pvu4g1665 4 43946612 43950275 PCT