Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3238 ATGGATTTAGAAGAAAAGTTCCTGGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCTGGAAAAAAATGGCCATTCTGATGGTGCTTCGAAAAGTTCAGAACTCCTTCAGCAGTTTGTAAAATGTGGTCTGAAGAAGGAACTTCTTCGAACGTGTGTTGATAAGGACAAAAAAAACATTTCAATTAAAAGCAGGATGACTGAAACTAAGTCAACTGGTAAGATGATTAAGAAACAAGACACAAAAAAGGTTTCTAGTTTCAGCCATCAGCCATCTAGAAAGCAGTCTCGGAAGGGTGAAAATCCCACTCGACTCATAGCTCCTCCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATCTGTAAAAATTCTGCTTGTAGGGCTGTTCTGTCTATAGATGACACATTCTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCGAGTCTTTGGTTAGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGTGCCCTTTTACATAAAAAGGTGGGGGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACGGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTGGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTGGACGGAACCACAAAATTCAAAGACTTGCATCAAACAGTTCAAGAGGCGAAGGCTAAGCTGGAGACAGAAGTTGGCCCTGTGAATGGCGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCTAGTGATATACAGAAACTCTGTTCACTTGCTATTGAGAAAGCTGATAGGTGGCTTGCCACTGTTCTGAATGTAAACTCGGATTCTGCAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCGGTCAAAATCATTTTAATTGAAATATCAAATATATGTTCTGAGGAGATTAAGGGATACAAGCTCTGGTATTACAAGAGTCGGGATGAATCACCCACCAAAGATCCTGTTTCCGTGTTTCCCAAGTCTCAGAGGAGGATTTTGATATCCAACCTCAACCCTTGCACAGAATATACTTTTAGGATTATATCTTACACAGATACACGTGACCTGGGTCATTCTGAGGCTAAGTGTTTTACCAAGAGCATCGAGGTAATTAAAAATAGCCCCTCCTCGTCTGTTGCTAATAATCACGAAAAAGAGAACCTTCTATCTAGGGGCAATTCTTCGGGATCCAAGATGGTGCCAAATGACACACTGAACAGCTATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGCTCTGTCAATATGAAAGATTGCTGCGGACATAGTGAACGGTTAGATAAACCAAGAATTCCAGAAGCACAGTTGCCCTCAGTTACTCGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCGTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCAAACTGTGGAGGGAGACGATGATGCTGCTTCTCATGATCTAGACAAAAATGGTTTGGCAAGATCACATGGGAGTGGGGATTCTCAAACCTGGACCCATGGGCCAACAGGAGAAGTATCTGCTGTTGATTCACGCATAGATATGTGCAGAAAAAGGATAGCAAGCACATTGGAAGAGACACATGATTGTGACAGCACTTTAATTAACGGTTCTCCTTTACGTATATGTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTACTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACTGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAGACTCTTATGGATGATCCGAGTAGTTTGGCAGGGCAACTGGTAGACTCTTTTTCTGATATTATATCCAACAAGAGGCAAAAAAATGGATTCAGTAGTGAAGCTGGGGCATCAAATTAA 2166 0.4192 MDLEEKFLAKVSGVQSLSSSVQSTLEKNGHSDGASKSSELLQQFVKCGLKKELLRTCVDKDKKNISIKSRMTETKSTGKMIKKQDTKKVSSFSHQPSRKQSRKGENPTRLIAPPDQSSDFGHSNTWICKNSACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTTKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDIQKLCSLAIEKADRWLATVLNVNSDSAEGSLPAACKFVFEEVTTSSVKIILIEISNICSEEIKGYKLWYYKSRDESPTKDPVSVFPKSQRRILISNLNPCTEYTFRIISYTDTRDLGHSEAKCFTKSIEVIKNSPSSSVANNHEKENLLSRGNSSGSKMVPNDTLNSYGFKVRDLGKILRLAWAQEQGYLEEFCSVNMKDCCGHSERLDKPRIPEAQLPSVTRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQTVEGDDDAASHDLDKNGLARSHGSGDSQTWTHGPTGEVSAVDSRIDMCRKRIASTLEETHDCDSTLINGSPLRICDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIISNKRQKNGFSSEAGASN* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3238 721 MobiDBLite consensus disorder prediction 13 37 - -
Pvu2g3238 721 MobiDBLite consensus disorder prediction 69 115 - -
Pvu2g3238 721 CDD FN3 357 408 IPR003961 GO:0005515
Pvu2g3238 721 PANTHER VIN3-LIKE PROTEIN 1 55 716 - -
Pvu2g3238 721 MobiDBLite consensus disorder prediction 574 589 - -
Pvu2g3238 721 SUPERFAMILY Fibronectin type III 333 409 IPR036116 GO:0005515
Pvu2g3238 721 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Pvu2g3238 721 MobiDBLite consensus disorder prediction 562 589 - -
Pvu2g3238 721 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Pvu2g3238 721 Pfam Fibronectin type III domain 333 409 IPR003961 GO:0005515
Pvu2g3238 721 MobiDBLite consensus disorder prediction 69 89 - -
Pvu2g3238 721 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 716 IPR044514 GO:0010048|GO:0040029
Pvu2g3238 721 Gene3D Immunoglobulins 315 417 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3238 Pvu-Chr2 47549015 47556797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3238 124 712 PHD Gene Family AT3G24440 48.515 1.03e-179 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3238 - - gmx:100816128 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3238 2 47549015 47556797 Pvu2g3238 2 47549015 47556797 ECH
Pvu2g3238 2 47549015 47556797 Pvu4g1705 4 44304307 44310976 PCT