LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g3235	ATGGCTAGTCGACTGAAGGAGGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCACACCGAATCGGAGATGTATTAACTGTAACAGTTTGGGACCACAATATGTATGCACAAATTTCTGGACGTTTGTATGCATAAACTGTAGCGGAATACACCGAGAATTCACACATCGGGTAAAATCAATTTCAATGGCTAAATTTACTGCACTAGAAGTTAGTGCACTTCAGGAAGGTGGAAATCAGCGTGCAAAAGAAATCTATTTTAAAGAATGGGATCCACAACTTCATTCTTTGCCTGATAGCAGCCTTGTTGAGAAGCTGCGGGATTTCATCAAGCATGTATATGTGGATAGAAGATTCAGTGGTGAAAGGACCAATGATAAACCTCCAAGAGCTAAGGGTGTCAAGGATGATTTCTATGAAAACAAGAGGACAGAGACGTATAAAGGAGGACCTAGAAGCCCTCCTTATGAGGATCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCAGGATATGATCAAGAAAATAGGCAATATGGTGGTGATTACAAGATAAGTCCTGGTCGTCCTCCTATAGTCAATGATTGGCGTCGAGAAGAAAGATTTGGGGATGGACGGAAATATGAAGATAATAAAATATCTGATGGAAATCATAAGTGGGAGGGCCATTCTCCTGATCGAACCAAGGATCCAGATTCTTCCAGCCCACCTGCCGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCGCCCAAAACAAACAGTGGACTGGCTGCTAATGGCTCAACATTCACACAGAGAACTGCATCTTCCAGTAGCTTAGAATCCAGCCATGGAACCTCAGTAGAAGTTAAGTCTGAGACTCTTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGTTGCTCCAGCAATTCCTCAAGCCCATCAGACTGCAGCAGCTGAACTTGGGACGCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATTCTGCTCCTGAGGCAAAAACGGCTCATGGTCCTTCTAACGTTATTCCGCTTGAATCTGTGCTTACTCAATTGACAGTACCAGTATCTTTACCTTCTCAAGTTTCCCAAGTCCAAGGACCTGTGACGGGATCAACTCTTACTGCTGCTGCTACTGGAGGACAGTGGGCTAGTTTGCAGTATCAGCAACAGCAACAGCAACCTTTGTTCGCTGCTGTCACTAGTCAGCCTTCTATTCAACAAGCTACACCACCAGTTGGTGGAGCTTTGAATAATCAGCCCTGGACTATACCTTCTGTACCATTGGTGCAAGGGTATCCAAACACATCAATGCCCCATGTGTCACACGTTGTCCCAAAGTCTGCCATTGAGGCTAAATCCAGTGTTGTTTTTCAATCGTCTACAGTAGACATGAAACCAAGTGGAAGAAGTGAACTTCCAGAGGATCTATTCACAGTTAAATATTCATCCTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCTACCGCCTAGCATGGGTATCTCAATTCCATACAATAATGCAGTGCCCATTCCAAGTTTTCCACAAGCATCAAAATCAAAAAATCCATTTGATGTCAATAACGAACCTACTCCAGTTCAAGCCCCAACATTTCCTTCCATGTCATCTCTGCAAGGTGCTTTGGCAATACCTTCAGCAACAATGCACTCTTCAAACATGGGTAATCCATCTCTTGCCTGGAATCCGTCCTCATCATCATATGTATCAGTGCCGCCTCTTCAAGCACAAACTCTTGCACCCGAAATTGGACCAGGGGCATACATGGGACAACAAATGGCCACTAACATTCCAATGCCAAGGCATCAAGGATTTGGGAATTTTACTACTGAGGAAACTGCTTTTGGCTTCTCAAATCCAGATCAGAAGCTGAGTGGTAGTAGGTTGTCAACTGCTGTTACCCCAAACACCTTCCAGGCAGGAGGAAACCCTTTCGGATGA	2013	0.4416	MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCINCSGIHREFTHRVKSISMAKFTALEVSALQEGGNQRAKEIYFKEWDPQLHSLPDSSLVEKLRDFIKHVYVDRRFSGERTNDKPPRAKGVKDDFYENKRTETYKGGPRSPPYEDRYSDRSSPGGRSPGYDQENRQYGGDYKISPGRPPIVNDWRREERFGDGRKYEDNKISDGNHKWEGHSPDRTKDPDSSSPPAVRPVREILGENVVPLRISEPPKTNSGLAANGSTFTQRTASSSSLESSHGTSVEVKSETLKSLIDFDDDPEPSVAPAIPQAHQTAAAELGTPANSNDNNWASFDSAPEAKTAHGPSNVIPLESVLTQLTVPVSLPSQVSQVQGPVTGSTLTAAATGGQWASLQYQQQQQQPLFAAVTSQPSIQQATPPVGGALNNQPWTIPSVPLVQGYPNTSMPHVSHVVPKSAIEAKSSVVFQSSTVDMKPSGRSELPEDLFTVKYSSFPAPVPGWQMGLPPSMGISIPYNNAVPIPSFPQASKSKNPFDVNNEPTPVQAPTFPSMSSLQGALAIPSATMHSSNMGNPSLAWNPSSSSYVSVPPLQAQTLAPEIGPGAYMGQQMATNIPMPRHQGFGNFTTEETAFGFSNPDQKLSGSRLSTAVTPNTFQAGGNPFG*	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g3235	670	MobiDBLite	consensus disorder prediction	124	150	-	-
	Pvu2g3235	670	CDD	ArfGap_AGFG	12	122	-	-
	Pvu2g3235	670	MobiDBLite	consensus disorder prediction	331	346	-	-
	Pvu2g3235	670	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Pvu2g3235	670	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Pvu2g3235	670	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Pvu2g3235	670	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Pvu2g3235	670	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Pvu2g3235	670	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096
	Pvu2g3235	670	Gene3D	Arf GTPase activating protein	2	133	IPR038508	-
	Pvu2g3235	670	MobiDBLite	consensus disorder prediction	265	297	-	-
	Pvu2g3235	670	MobiDBLite	consensus disorder prediction	197	234	-	-
	Pvu2g3235	670	PANTHER	ARF GTPASE ACTIVATOR	1	397	-	-
	Pvu2g3235	670	PANTHER	ARF GTPASE ACTIVATOR	397	670	-	-
	Pvu2g3235	670	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Pvu2g3235	670	MobiDBLite	consensus disorder prediction	331	356	-	-
	Pvu2g3235	670	PANTHER	ARFGAP/RECO-RELATED	397	670	IPR044820	GO:0005096
	Pvu2g3235	670	PANTHER	ARFGAP/RECO-RELATED	1	397	IPR044820	GO:0005096
	Pvu2g3235	670	MobiDBLite	consensus disorder prediction	124	297	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g3235	Pvu-Chr2	47509781	47517313	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu2g3235	12	122	C2H2 Transcription Factor Family	AT4G21160	32.479	6.52e-11	62.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g3235	-		-	vra:106765388	1030.01