Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3233 ATGAAGAAGAAAGAAGCACACTCCTCCAATCTCACATTCCTCCTCTTGGTCACACTCTTCTTATGTGCCAATGGTTCCTCTCTCACGCTCACCCACCCACGCCACGTTCTCTCCTACAGGGACGAGTTTGGCGACAGAGGAGAGAATGTGAGCGTAGACCCTTCCCTTGTTTTCCAAAATAACCGTCTCAGAGACGCTTACATTGCCTTGCAAGCTTGGAAGCTAGCCATTTTATCTGATCCCCAAAACCAGACAACCGACTGGGTAGGATCCCAAGTTTGTACCTACACCGGAGTTTACTGTGCACCCGCGCTCGACAACCCCTCCATCCAAACGGTGGCCGGCATTGATCTCAACCATCGCGACATTGCCGGCTACTTACCGGAGGAGCTCGGTTTGCTCGTAGATCTTGCACTCTTCCACATCAACTCCAACAGATTCTGCGGCACTGTGCCCCACACCTTCCACAAGTTGATACTCCTCCACGAGCTGGATCTCAGTAACAACCGCTTCGCCGGGAGCTTCCCCGAGGTGGTTCTGCACCTTCCTTCGCTCAAGTTCTTGGATCTCAGGTTCAACGAATTCGAAGGAACTGTGCCCAGGGAATTGTTCGATAAAGATCTCGACGCCATTTTCATCAACGACAATCGTTTCGTCTTTGATCTTCCCGACAACTTCGGCAACTCCCCCGTGTCCGTCATCGTCCTCGCCAACAATAGGTTCCATGGCTGCATTCCGCACAGCCTCGGCAACATGTCCAACCTCAACGAGATCATTCTCATGAACAACGAATTCCGCTCCTGCTTGCCCTCCGAGATAGGCTTGTTGAAGAACCTCACGGTGTTCGACGTCAGCTTTAACCAACTTCTTGGTCCTTTACCCACGGCCGTTGGAAACGCCGTCAGCTTGGAGCAGCTCAACGTGGCCCACAACTTGCTCTCCGGTCAAATTCCTCCTAGTATTTGTATGTTGCCTCATCTCCTCAACTTCACTTACTCCTCTAACTTCTTCACCGGCGAACCTCCCGCCTGCCTCGCCTTGCCGGCGTTTGACGATAGACTCAACTGCTTGCCGGCGAGGCCCGTTCAGAGGCCTCCGGCGCAATGTCAGGCTTTCTTGTCTAAGCCTGTCGATTGTAACTCCTTTAACTGCAAATCGTTTGTTCCTTCACCAACATCACCTTCACCTGTAACTCCTTCACCTCCATCACCTGGTACACCTTCACCTATAACTCCTTCGCCGTTACCTTCGCCTTCATCGCCACCTTCACCTGTAACTCCTTCACCCCCATCACCTGGTACACCTTCACCCGGAACTCCTTCACCTCCATCACCTGGGACTCCTTCGCATCCATCACCTGGGACACCTTCACCTGTAACTCCTTCGCCTTCATCGCCTCCTTCACCTGCTACTCCTTCACCATTACCTTCACCTACAACACCTTCACCACTGCCTACACCTCCAGCGCCTGCAACACATCCTTCGCCACCGAACCCACTGGTACCTACACCTCCTTCGGAACCACCGGTGGTCGGACATTCCCCTCCACCAGGACCGGTGGCACCTTCCCCACTACCACCCGTTCATACTCCTCCTTCTCCGGTGTATTTGCCACCACCACATTCTTCCCCTGCTCCACCTGTCTACTCTCCACAACCTCCAACACCTTCACATTTGCCGCCTCCGTCATATACTCCACCTTCTCCTTCACCTTCTCCAACGCCACCCTATGTTACCCACCCTCCGCCGCCGCCGGCCCCAACCTTCTCGACACCACCACCTTCACATGATTACGGCTCATCGCCACCTCCAACACCTCATCACTCACCCTCACCTCATGCATATCCTTATTTATCACCCCCACCACCTTCTCCTGTTCATTTTCCACCTCCACCACCTTGTACAGAACTTCCTCCACCCCCTCCTCAATCAACACCTTCTCCCACACCTTACCTTCCACCACCATCCCCATCTCACACACCTTATCACCCACCACCATCCCCTTCTAACACTCCTTATCACCCATCACCATCCCATTCTCCCCCTCCCCCTCCACCGCTTCAATACAGTTCGCCGCCGCCGCCGCCGGCATCTCCGCCACCCGTTTCTCCACCGCCACCTGTTGTGTACCAAAACCCACCACCTGCCCCTGTATATGAAGGGCCATTGCCACCCATCGTTGGACTCCCATACGCATCGCCTCCACCACCACCCTTTTATTGA 2223 0.5425 MKKKEAHSSNLTFLLLVTLFLCANGSSLTLTHPRHVLSYRDEFGDRGENVSVDPSLVFQNNRLRDAYIALQAWKLAILSDPQNQTTDWVGSQVCTYTGVYCAPALDNPSIQTVAGIDLNHRDIAGYLPEELGLLVDLALFHINSNRFCGTVPHTFHKLILLHELDLSNNRFAGSFPEVVLHLPSLKFLDLRFNEFEGTVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPHSLGNMSNLNEIILMNNEFRSCLPSEIGLLKNLTVFDVSFNQLLGPLPTAVGNAVSLEQLNVAHNLLSGQIPPSICMLPHLLNFTYSSNFFTGEPPACLALPAFDDRLNCLPARPVQRPPAQCQAFLSKPVDCNSFNCKSFVPSPTSPSPVTPSPPSPGTPSPITPSPLPSPSSPPSPVTPSPPSPGTPSPGTPSPPSPGTPSHPSPGTPSPVTPSPSSPPSPATPSPLPSPTTPSPLPTPPAPATHPSPPNPLVPTPPSEPPVVGHSPPPGPVAPSPLPPVHTPPSPVYLPPPHSSPAPPVYSPQPPTPSHLPPPSYTPPSPSPSPTPPYVTHPPPPPAPTFSTPPPSHDYGSSPPPTPHHSPSPHAYPYLSPPPPSPVHFPPPPPCTELPPPPPQSTPSPTPYLPPPSPSHTPYHPPPSPSNTPYHPSPSHSPPPPPPLQYSSPPPPPASPPPVSPPPPVVYQNPPPAPVYEGPLPPIVGLPYASPPPPPFY* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3233 740 Pfam Leucine rich repeat 139 194 IPR001611 GO:0005515
Pvu2g3233 740 Gene3D Ribonuclease Inhibitor 232 357 IPR032675 -
Pvu2g3233 740 MobiDBLite consensus disorder prediction 388 740 - -
Pvu2g3233 740 SUPERFAMILY L domain-like 77 348 - -
Pvu2g3233 740 MobiDBLite consensus disorder prediction 392 740 - -
Pvu2g3233 740 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 449 - -
Pvu2g3233 740 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 449 - -
Pvu2g3233 740 Gene3D Ribonuclease Inhibitor 65 231 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3233 Pvu-Chr2 47490383 47493336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3233 26 392 Leucine-rich Repeat extension Gene Families AT3G24480 73.641 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3233 - - pvu:PHAVU_002G314200g 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3233 2 47490383 47493336 Pvu2g3233 2 47490383 47493336 ECH