Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3218 ATGACTTCTCTCTCTGTTTTTCCCTCACTCCCATTGCTTCAAAACCCTAACTTCACTAATCCCCGTCTCTCTAATTTCATCAATTTCCCTTTCAATTCCACGCGTTCTTTCGCACCACTCTCTCGCCGTGATTTCCTATGCAGAGCGTTCAGGGATTCCAGCGAGGACACCAAAGCGGTCCTCAAGTCCGACGACAGCGGCGGTGGAGACGGAGGCGGAGACGGTGGGGGTGACCGGGACGCGGAGAAAAAAGAAGGGCCTTTGCCGGAGTGGTTGAATTTCACTACTGATGACGCCAAAACGGTGCTTGCTGCTATCGCAATTTCCCTTGCGTTTCGCACCTTCGTGGCGGAGCCTAGGTACATTCCCTCGCTGTCAATGTACCCTACATTTGATGTTGGCGATCGACTTGTTGCTGAAAAGGTTTCTTACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTTAAAAGTCCTCCAGTTCTTCAAGAAGTTGGATATAGTGACGACGATGTTTTTATAAAGCGTGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTCCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAGACTACATTCTTGAACCACCTGCATATGAGATGAAACCCACACGAGTACCAGAAAACTACGTTTTTGTGATGGGTGACAACCGGAATAACAGCTATGATTCCCATGTGTGGGGTCCCCTGCCATCGAAGAACATCATAGGCAGATCAGTATTTCGGTATTGGCCACCAAATAGAATTGCTGGCACAGTTTCTAAGGACAGTTGCAGTATTGAGACCACGCCGGAGAATACAGAGACTGCTCTACCTTCTCAATGA 861 0.4739 MTSLSVFPSLPLLQNPNFTNPRLSNFINFPFNSTRSFAPLSRRDFLCRAFRDSSEDTKAVLKSDDSGGGDGGGDGGGDRDAEKKEGPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTVSKDSCSIETTPENTETALPSQ* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3218 286 ProSitePatterns Signal peptidases I serine active site. 124 131 IPR019756 GO:0004252|GO:0016021
Pvu2g3218 286 MobiDBLite consensus disorder prediction 58 89 - -
Pvu2g3218 286 CDD S26_SPase_I 118 250 IPR019533 GO:0004252|GO:0006465
Pvu2g3218 286 TIGRFAM sigpep_I_bact: signal peptidase I 100 258 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu2g3218 286 ProSitePatterns Signal peptidases I signature 3. 223 236 IPR019758 GO:0004252|GO:0016021
Pvu2g3218 286 Gene3D Umud Fragment, subunit A 112 269 - -
Pvu2g3218 286 Pfam Signal peptidase, peptidase S26 99 256 IPR019533 GO:0004252|GO:0006465
Pvu2g3218 286 PANTHER SIGNAL PEPTIDASE I 81 267 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu2g3218 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 115 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu2g3218 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 174 186 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu2g3218 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 218 237 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu2g3218 286 SUPERFAMILY LexA/Signal peptidase 113 262 IPR036286 -
Pvu2g3218 286 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 81 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3218 Pvu-Chr2 47376673 47379457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3218 127 257 MADS-box Gene Family AT1G29960 32.576 9.48e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3218 K03100 - gmx:100815810 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3218 2 47376673 47379457 Pvu2g3218 2 47376673 47379457 ECH