Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3209 ATGGAGATGGATCCTCCACCCAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAGTACGAGGTCATGGAGCGGGTCGGGTCAGGAGCTTACGCCGACGTCTACCGCGGCCGTCGCCTCTCCGATGGCCTCACCGTCGCCCTCAAAGAAATCCACGACTACCAGTCCGCGTTCCGAGAAATCGATGCGTTAGAGCTCCTCCAGGGATTCCCAAACGTCATCGTTTTGCACGAATACTTCTGGCGCGAGGACGAAGACGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCAACCGTCATCGCTGACGCCGCCAAGGCCAACCAGCCCCTCCCCGCCGGCCAGCTCAAGCGCTGGATGATCCAGATTCTCTCTGGCGTCGACGCCTGCCACCGCAACATGGTCCTCCATCGTGATTTGAAGCCCTCGAATCTCTTAATTTCCGAAAACGGCCACCTCAAGATCGCCGATTTTGGACAGGCAAGAATTCTCACGGAGGAGCCTGGATTTGATGCTTCTAATAATCATGAAGAATATTCTAGAGACATTGATAATAAGGATACTGGTATTAATACTCACGGTGGAAATGCAACATGCACCACAAGTGACATAGACAGGGAAGATGAAGAGAAAGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTATTAACTCTGCGGCCTTTGTTTCCTGGAGCTGCTGATATTGACCAGATCAGTAGAATCATTGGTGTTTTAGGTAACCTCGATGAGAGTATTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAAAACCCTTCTGGTATTGAAGCCTGTTTACCTAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTGATTCATGACAAGTACTTCAATGAAGAGCCTCTTCCTGTGCCGGTTTCTGAGCTGCCAGTTCCTCTTAACAGAAAAGGGCAAGATGAGGATTCCCCTGGTGGGTGGGGTGATTTAGATGAAATGGAATCTGATTCTGATTTTGATGACTTTGGCCCTCTCAATATCACAAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1230 0.4951 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALELLQGFPNVIVLHEYFWREDEDAVLVLEFLRTDLATVIADAAKANQPLPAGQLKRWMIQILSGVDACHRNMVLHRDLKPSNLLISENGHLKIADFGQARILTEEPGFDASNNHEEYSRDIDNKDTGINTHGGNATCTTSDIDREDEEKELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLRPLFPGAADIDQISRIIGVLGNLDESIWVGCSKLPDYGIISFSKVENPSGIEACLPNRSPDEVALVKRLVCYDPAKRATAMELIHDKYFNEEPLPVPVSELPVPLNRKGQDEDSPGGWGDLDEMESDSDFDDFGPLNITRTGTGFSIQFP* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3209 409 MobiDBLite consensus disorder prediction 375 389 - -
Pvu2g3209 409 Pfam Protein kinase domain 22 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3209 409 SUPERFAMILY Protein kinase-like (PK-like) 15 354 IPR011009 -
Pvu2g3209 409 PANTHER CELL DIVISION PROTEIN KINASE 13 366 - -
Pvu2g3209 409 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
Pvu2g3209 409 SMART serkin_6 22 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3209 409 PANTHER CYCLIN-DEPENDENT KINASE 10 13 366 - -
Pvu2g3209 409 Gene3D Transferase(Phosphotransferase) domain 1 109 351 - -
Pvu2g3209 409 MobiDBLite consensus disorder prediction 359 395 - -
Pvu2g3209 409 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Pvu2g3209 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Pvu2g3209 409 ProSiteProfiles Protein kinase domain profile. 22 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3209 Pvu-Chr2 47319790 47322867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3209 6 409 Core Cell Cycle Gene Families AT4G28980 57.263 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Pvu2g3209 Pkinase 1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3209 - - gmx:100801952 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3209 2 47319790 47322867 Pvu2g3209 2 47319790 47322867 ECH
Pvu2g3209 2 47319790 47322867 Pvu4g1754 4 44738292 44741003 PCT