Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3207 ATGACCACCGTAGCGGTCACCACTCGATCTCAGATCCTCCGCCACACCGCTGCATTTACCTCCTCAGTCCTCTCGCAACCAGAACTCCGGCGCCGCCTCATCGCCACTCTTCTCCGCGACACTCCAATCTCCGACGAGAAACACCTCAAACTCGCCGCAGACACTCTAGAAAGCGCGATTTCCTTCGCCAGCCCCGCCCTTCGGACCTCCTCCCTCTCTCTCCTGGAGAAGCTCCTCTTCCCTCTCCCCGACTTCGCCCTCTCCTCGCTACTCCTCTCTCTCGCCCACGCCATCCGTAACCGCCCAACCGAATCCGCCACCAGCCTCCTCCAAATCTTTCACTCCAACAAAAACAACAACGCTTCCCTCGCTAGATCGGAAATCGCTCCTGTGCTCTACGAGCGCCTCTTCTCTCTACATCTCTTCCCTGTCTTCCGCTGGTTCGATGAGCAGAGAACGAAGATTCTCTCCTCCAGTCCCTCAACCTCGAGCCGTGAAAACGATTATTCGGTCTCCGAGGAGTACTCGGTGGTGCTGCCTTGCGCCAAGGTGCTATCGAAGATGAGCGAGGAGCAGGCCGGAAAGCTCCGGGAGGTGGAGAGAGAGTACGAAGAAGTTCTCGACGAGAACTGTAGGGTTCTCGCAGAGTATTTCAAAGAGGTTTTGGTGAAAGAGAACAGTGACGCGGGAATTAGTCCACCGCCGTTGATACTGAAGAGCGCCGCTGAAGGTGGCGGCAGGGAGAACCAAACGGAGGAGATGACGCCAATGAGTGTGTTGGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAGCATCTGTTGAATTTTTGAGCCCCGGTTCCAGCAGAAGATCTCCCCAGACACCATTTTATCCTCAAAGAGTCTTTTCCAGAATTCTCAATCCCAAAAATCCTTCAAAAAATTGGACAACGCCACTCCATTTAAACACTACACCTGACGCTGATTTTTCTTCAGAAGAGAGTTTGCTTAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAAGGACACAACTATCGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAATGCAAACCTTCTTCAAACAATCTAGGGATTCACCAGATTATCCTATGGCAGACTTCGATAACCCGCTGAATGGAGTTGGGAAACATGCACCTCCCAAGGATTTTGTCTGTCCAATCACAAGTCATATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACCTATGAACGTAAAGCGATCGAGGAATGGTTCAACAGAGGGAACTCAACCTGTCCCATCACCCGCCAGAAGCTGCAAAACATTCAGCTGCCCAAAACAAATTATGTGCTCAAACGATTAATTGCGAGCTGGAAAGATCGCAACCCCCATTTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATGCTGAGGCAGCTGTGCAGTCAACAACGCCTTCAACTTCTCCTAATAGTGTTATAATCCAAGCCACAGTTGATGGGATGATGAGTGAGTTACGCTGTGCCATCAATAATCTGTACATGTCAGAGATTCTCAAGGAATCGGAAACGGCCGTGCTTCAAATTGAGAAGTTCTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGAATGTTAGTAAAACCTGCGATTATCAATGGATTTATGGAGATTCTTTTCAATTCTGTGGAGGCCCAGGTGCTACAAGCGGCAGTTTTCCTTCTAGCCGAGATGGGGTCTAGGGACAACTCTGTTATCGAGACTCTCACCCGTGTGAAGACTGATGTGGAATGTATCATTGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGTTGTTGCACCTACTGAATCCTCCCATTACGAGTCTTACAGAGATGGCCATAGTGGAGTCTCTCATAACGGTTTTGAATACGAAAGAGGAAGAATTGGTTGCGATGTGTTTGAAGCCAAAAACTGCTGCAATGCTTTTACTTGCAAGGATAACTGGAAGCAGTGAAGAGATAATTGCATCTTCTGTTGTCAATACCCTTTTCTCTGGAAATGCAATTGGAACTATTGTCAGCAGTTTTGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTAGAGATCTTACTGAGATGCATGGAAGAAGATGGGACTTGCAGGAGTAACATTGCTGATAAAGCAGAGTTGTCACCTCTTATGGAAACTTTAATCGGTGCTGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTGCCGAGTTGGTCAAATTAAATAGGAGGACATCCACTGAACAAATTCTCCATATTATAAAGGAACAAGGACCTTTTAGTACAATGCATACTCTCCTTATTTATTTGCAGGCAGCACTTCACGATCATTGTCCAGTTATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGCGAAGAGGCTATGGATACTCTTATTTCATGCCTGAGAAACACAGATTTCCCCGTTATCCAATTAGCGGCTGCAGATACAATCATGTCACTGCAAGGAAGCTTCGACTTCTCCGGAAACCCTCTAATCAGAGAAGTCCTCCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTATTGGTGGATCATCAGATTAGCAACTCCAGTCCAGAAATTGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATATATTCTAGTTAGCCATGAATTTGGCACTATTTTTGAGGCTTTAGCTGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTTTATCAGCTACCTGGCTCACGTACATGTTGACCATTCTACCGGATACAGGCATACAAGTACCAGCTCGTGCTTGCTTGCTGAAGCCGTTCATAGCTAAATTAAATTCTGCTAGGGATGTAGAAGACAGAATCCTTTCTATGGTTGCTCTCAATAGCTTTCTTCATTTCCCTGAAGGCTTAGGTGATCTAACTTCCTACACTAAGGATATTTTAAAAGGGTTGAGAGAGCTCAAGAGATCTTGTCCCTTAGCATCTAAAATGCTAAAATCTCTGGTTGAAGAAAATGAATCTAAAGCGGACATTTGGATACATAAAGAGCTCATAAAACAAGACTGCAGCGAAAATGGAGAGGTGTTGTCTGTCATATGCTTTAAGGATAAAAAAATTTCGGGTCATACAGATGGCACAATTAAGGTCTGGACATTAAAGAATAATTTATTCCATCTGTTGCAAGAAATCCAAGAACATACTAAAGCAGTGACAAACTTGGTGATTTCAGAATCTGGTGACAGACTGTACAGTGGTTCACTTGACCGAACTTCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTACAGGTGTATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCGATAGCTTATCTTGTTTCGTTTCGCAGGGGACTGGTGTCAAGGTTCAGTCACTGAATGGAGAGTCAAAGCTGTTAAATTCTAGCAAATATGTGAAGTGTTTGGCTCATGTTAATGGGAAATTATATTGTGGATGCCGTGACAGTAGTGTTCAGGAGATACACTTGGCCACTGGAACAGTCAATACTATTCAAAGTGGTTATAAAAGATTACTTGCAAAAGCAAATCCTATTCATGCACTACAAATTCATGGTGAACTTATATACGCAGCTGGTTCTTTCTTGGATGGTTCTTCTTTAAAGATATGGAACAGTTCCAATTACAGTATGGTTGGATCACTGCAAACTGTATCTGAAGTGCGGGCTATGGCAGTGAGCTCAGGATTGATTTATTTGGGGTGCAAAGGAGGTACGGTGGAAATCTGGGATATGAAAAAACTCAGTAAAGTTGACACGTTGCAAATGGGTACCAATTGTAGGGTCAATTGCATGGCTCTAGACAGCAATGAAGAATTTTTGGTAATTGGAACTTCAGATGGACAAATTCAGGCTTGGGAAATGAATTAA 4005 0.4467 MTTVAVTTRSQILRHTAAFTSSVLSQPELRRRLIATLLRDTPISDEKHLKLAADTLESAISFASPALRTSSLSLLEKLLFPLPDFALSSLLLSLAHAIRNRPTESATSLLQIFHSNKNNNASLARSEIAPVLYERLFSLHLFPVFRWFDEQRTKILSSSPSTSSRENDYSVSEEYSVVLPCAKVLSKMSEEQAGKLREVEREYEEVLDENCRVLAEYFKEVLVKENSDAGISPPPLILKSAAEGGGRENQTEEMTPMSVLENGRYNPIWSEREASVEFLSPGSSRRSPQTPFYPQRVFSRILNPKNPSKNWTTPLHLNTTPDADFSSEESLLSSSSDSEAENEEKDTTIALLEPRQSQIQEQMQTFFKQSRDSPDYPMADFDNPLNGVGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNSTCPITRQKLQNIQLPKTNYVLKRLIASWKDRNPHLVQPPYESPYEDAEAAVQSTTPSTSPNSVIIQATVDGMMSELRCAINNLYMSEILKESETAVLQIEKFWRGVNLGVDIHRMLVKPAIINGFMEILFNSVEAQVLQAAVFLLAEMGSRDNSVIETLTRVKTDVECIIALFKNGLTEAVVLLHLLNPPITSLTEMAIVESLITVLNTKEEELVAMCLKPKTAAMLLLARITGSSEEIIASSVVNTLFSGNAIGTIVSSFGADLAKERIAAVEILLRCMEEDGTCRSNIADKAELSPLMETLIGADDGERFKIIQFFAELVKLNRRTSTEQILHIIKEQGPFSTMHTLLIYLQAALHDHCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPVIQLAAADTIMSLQGSFDFSGNPLIREVLLKRAGIDKSSRSLVLVDHQISNSSPEIDITPEEEKAADDWERRIAYILVSHEFGTIFEALADGMKSRNPELRSACFLSATWLTYMLTILPDTGIQVPARACLLKPFIAKLNSARDVEDRILSMVALNSFLHFPEGLGDLTSYTKDILKGLRELKRSCPLASKMLKSLVEENESKADIWIHKELIKQDCSENGEVLSVICFKDKKISGHTDGTIKVWTLKNNLFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTSKVWSIGKAAIHCVQVYDMKDQIHNLVVTDSLSCFVSQGTGVKVQSLNGESKLLNSSKYVKCLAHVNGKLYCGCRDSSVQEIHLATGTVNTIQSGYKRLLAKANPIHALQIHGELIYAAGSFLDGSSLKIWNSSNYSMVGSLQTVSEVRAMAVSSGLIYLGCKGGTVEIWDMKKLSKVDTLQMGTNCRVNCMALDSNEEFLVIGTSDGQIQAWEMN* 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3207 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1300 1334 IPR001680 GO:0005515
Pvu2g3207 1334 SUPERFAMILY WD40 repeat-like 1067 1333 IPR036322 GO:0005515
Pvu2g3207 1334 MobiDBLite consensus disorder prediction 280 337 - -
Pvu2g3207 1334 SUPERFAMILY RING/U-box 392 468 - -
Pvu2g3207 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 469 IPR013083 -
Pvu2g3207 1334 Pfam U-box domain 394 464 IPR003613 GO:0004842|GO:0016567
Pvu2g3207 1334 ProSitePatterns Trp-Asp (WD) repeats signature. 1319 1333 IPR019775 -
Pvu2g3207 1334 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1333 - -
Pvu2g3207 1334 CDD RING-Ubox_PUB 397 439 IPR045210 -
Pvu2g3207 1334 Pfam WD domain, G-beta repeat 1088 1123 IPR001680 GO:0005515
Pvu2g3207 1334 Coils Coil 695 715 - -
Pvu2g3207 1334 MobiDBLite consensus disorder prediction 240 259 - -
Pvu2g3207 1334 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1333 - -
Pvu2g3207 1334 Gene3D - 538 1029 IPR011989 -
Pvu2g3207 1334 SMART Ubox_2 396 460 IPR003613 GO:0004842|GO:0016567
Pvu2g3207 1334 SMART WD40_4 1158 1201 IPR001680 GO:0005515
Pvu2g3207 1334 SMART WD40_4 1042 1079 IPR001680 GO:0005515
Pvu2g3207 1334 SMART WD40_4 1211 1250 IPR001680 GO:0005515
Pvu2g3207 1334 SMART WD40_4 1084 1123 IPR001680 GO:0005515
Pvu2g3207 1334 SMART WD40_4 1292 1332 IPR001680 GO:0005515
Pvu2g3207 1334 SMART WD40_4 1253 1289 IPR001680 GO:0005515
Pvu2g3207 1334 ProSiteProfiles U-box domain profile. 392 467 IPR003613 GO:0004842|GO:0016567
Pvu2g3207 1334 ProSiteProfiles Trp-Asp (WD) repeats profile. 1091 1124 IPR001680 GO:0005515
Pvu2g3207 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1091 1124 - -
Pvu2g3207 1334 Gene3D - 1030 1149 IPR015943 GO:0005515
Pvu2g3207 1334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1300 1334 - -
Pvu2g3207 1334 SUPERFAMILY ARM repeat 33 1014 IPR016024 -
Pvu2g3207 1334 Gene3D - 1150 1334 IPR015943 GO:0005515
Pvu2g3207 1334 MobiDBLite consensus disorder prediction 279 346 - -
Pvu2g3207 1334 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3207 Pvu-Chr2 47305284 47313714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3207 382 495 U-box Gene Family AT1G67530 40.678 9.11e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3207 - - vun:114176884 2302.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3207 2 47305284 47313714 Pvu2g3207 2 47305284 47313714 ECH