Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3198 ATGGAACGCATCGTTGGCCTCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGTTCCTTTGGTGAAATCTACCTCGCGACGCATATTGACACCTTCGAGATCGTCGCCGTCAAGATCGAGAATAGTAAAACGAAGCATCCGCAACTTCTCTACGAGGCAAAGCTCTACAGTATTCTTCAAGGAGGAAGTGGAATTCCTAACAGAAAATGGTCTGGCATTGACGGGGAGGATAATGTGCTTGTTCTTGACTTGCTTGGGCCGAGTCTTGAAGATCTTTTTGTGTATAGTGGAAGGAAGTTTTCGTTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGGATAGAATATGTGCATTCTAAAGGATTTTTGCATAGGGATATTAAACCCGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATACCGGGATTCGACTACCAATCGCCACATCCCTTATAGGGAGAACAAAAACCTAACAGGTACAGCCCGATATGCAAGTTGCAATACTCACCTTGGAATTGAGCAAAGTCGGCGGGATGATTTGGAATCTCTAGGATATGTACTTTTGTATTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCTACGAAGAAACAAAAGTATGATAAAATATGTCAGAAGAAAGTTTCAACTCCTATTGAGGTACTTTGCAAAACTCATCCCGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAGCGACCTGATTATGGATTCTTAAAGCGCCTATTTCGGGACCTATTTGCTCGAGATGGTTATGATTTTGATTACGTTTTTGATTGGACCATTTTGAAGTACCAGCAATCACAAAAAAATGCCGTGCTACCTCCACTATCTCCGGTTCCAGGAGCAAGTAGCAGTCGAGCAATCCCAATGGATATTGACAGCCATCAAGGGCATGTTAAGGAGCGTATTAGAGCAGGCGATGCGACTGGTTCTGGTGTTAAAAATCAGCTTAAATCATCAGGGGGTAAAAATTTGAGTAATGAGAATCCACTTGACAAAAATATTTATGGAGAAGCAAATATACCGTCTGCTTCATACTCTCCTGCTAGTACTTCGAAAAGAAACTCCTTGAAGCAATCTTTGTCTGCTGAAGCTTCCAACCATGGACCATCAAGTAACTGGATGTCATCTCTGCAGCACATATCTTCTGCTAAATGA 1251 0.4269 MERIVGLKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYSILQGGSGIPNRKWSGIDGEDNVLVLDLLGPSLEDLFVYSGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKTHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFARDGYDFDYVFDWTILKYQQSQKNAVLPPLSPVPGASSSRAIPMDIDSHQGHVKERIRAGDATGSGVKNQLKSSGGKNLSNENPLDKNIYGEANIPSASYSPASTSKRNSLKQSLSAEASNHGPSSNWMSSLQHISSAK* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3198 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pvu2g3198 416 MobiDBLite consensus disorder prediction 343 364 - -
Pvu2g3198 416 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3198 416 MobiDBLite consensus disorder prediction 335 416 - -
Pvu2g3198 416 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 401 - -
Pvu2g3198 416 MobiDBLite consensus disorder prediction 371 416 - -
Pvu2g3198 416 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Pvu2g3198 416 PANTHER CASEIN KINASE-RELATED 1 401 - -
Pvu2g3198 416 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Pvu2g3198 416 SUPERFAMILY Protein kinase-like (PK-like) 8 290 IPR011009 -
Pvu2g3198 416 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3198 416 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3198 Pvu-Chr2 47227601 47233044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3198 4 236 AGC Kinase Gene Family AT3G08720 25.630 9.51e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pvu2g3198 Pkinase 1.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3198 K08960 - gmx:100800342 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3198 2 47227601 47233044 Pvu2g3198 2 47227601 47233044 ECH
Pvu2g3198 2 47227601 47233044 Pvu4g1785 4 45043922 45047816 PCT