Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3183 ATGGGTCGTCGTAGGATTGAAATTGCAGAGGTGAAGAATCCCAACACCAAGCTAGTAACGTTTTCCAAGCGCCGCACAGGTTTGTTCAAAAAAGCAAACGAATTGTCTGTTTTGTGCGGTGCAGAAGTTGCTATTGTTATGTTCTCTCCTGGGCAAAAGCCTTACTCTTATGCGCATCCAAGTGTTGACGTTGTTGCAGACAAATATCTTCGGAGGAAGCGCAGGTCAAATGTTGTCGGAGCAAATGTACGAGAAAATAACGCATCGAATGAAGTTGGTGAGAGGCTATGTCAGGAGTTATCTGCTGTTGAAGTTCTTACAGAGGAGGAACACAAGAAGGCTACGGAACTTGAAATGCGAGAGAAAGAACAAGAAGCTTCACAATTCTCCCAAAACAAAGAATTGTTGCAGAGTTCACCAGCCCTTCAGCGTATGGTGAAAGATTATGTGGATGCCATGGAGGTCTCAGAGTGTATGTTGCTTCTCGCAAAAGAAGCTGTAATTGGAGTACCAAATCGACCAATTACCAAAAGGAGAAGAAGGAATTGA 549 0.4372 MGRRRIEIAEVKNPNTKLVTFSKRRTGLFKKANELSVLCGAEVAIVMFSPGQKPYSYAHPSVDVVADKYLRRKRRSNVVGANVRENNASNEVGERLCQELSAVEVLTEEEHKKATELEMREKEQEASQFSQNKELLQSSPALQRMVKDYVDAMEVSECMLLLAKEAVIGVPNRPITKRRRRN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3183 182 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 170 - -
Pvu2g3183 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g3183 182 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pvu2g3183 182 PANTHER MADS BOX PROTEIN 2 170 - -
Pvu2g3183 182 Coils Coil 105 139 - -
Pvu2g3183 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pvu2g3183 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g3183 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g3183 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g3183 182 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Pvu2g3183 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3183 Pvu-Chr2 47109855 47110433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3183 1 131 Type I MADS-box Gene Family AT3G66656 41.176 5.57e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g3183 SRF-TF 6.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3183 - - gmx:100790601 202.216