Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3182 ATGGGTCGTCGTAAGATTGAGATTACGGAAGTGAAGGACCCCAACACCAAGCAAGTTACATTTTCCAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAACGAATTATCAATTTTGTGTGGTGCTGAAGTTGCTATTGTTGTGTTTTCACCTGGGAACAAGCCTTACTCTTTTGGGCACCCAAGTGTTGATGTTGTTGCAGACAAGTTTCTGCAACAAGAAAGTGCGTCAAATGTTGTCGTGACACCAAATGTTGACGAAGGAAGCAGTTCTTCCAATGCTGACAACATAGATGCACTGAATCAACAACTGTGTGGTGTTCAGACTCAAATAAATGATGAACATAAGAAGGCTAGTGAACTTGACAGGAGAAAGAAGCAACAAGACGTGACTAAACTTACCCACAACAAACAATTGCAACGTTCATACATAAGGGTTCAGCGTAAGGTGGAGGATTATCTTGATGCCATTGAAGTGTCAGAGTATATGTTGCTCCTTGCAAAAGAACCTGTAATTGGAGTAACAAAACAAGTAACTATCAAAAGAAGAAGGAATTGA 555 0.4036 MGRRKIEITEVKDPNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPSVDVVADKFLQQESASNVVVTPNVDEGSSSSNADNIDALNQQLCGVQTQINDEHKKASELDRRKKQQDVTKLTHNKQLQRSYIRVQRKVEDYLDAIEVSEYMLLLAKEPVIGVTKQVTIKRRRN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3182 184 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Pvu2g3182 184 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Pvu2g3182 184 PANTHER MADS BOX PROTEIN 2 177 - -
Pvu2g3182 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g3182 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g3182 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g3182 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g3182 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu2g3182 184 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pvu2g3182 184 Coils Coil 135 155 - -
Pvu2g3182 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pvu2g3182 184 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3182 Pvu-Chr2 47101641 47102195 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3182 1 69 Type I MADS-box Gene Family AT3G66656 73.913 2.06e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g3182 SRF-TF 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3182 - - gmx:100790601 246.514