Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3181 ATGGATAACAACAACGCTAACCATAGGAATTCAGAGAACAGCGATGATATTGCGGTGTCAATACTGAACAATTTCATAGATTTGGGTGGTTTTGATCTGGACGAGGCTCTTGCGGTGGTGGAGGGAGAATCACGGCGTGTAGTCGCAGCGTGCAAGAGCTACGTCTCCAAGTTGCCCACAGTTAACGACGTGAGGAGGGATGAGGTTTGCTCCGTTTGCATGGAGGGGTTCACCCGCCACAACAGGGATGGGGAAAACAAGCGAGTACCGTGCGGCCACGTGTACCACTCCAACTGCATCACCCTGTGGTTGGAGCACTGCAGCTCTTGCCCCCTTTGCCGCCGCCATATCTCATTCTAA 360 0.5278 MDNNNANHRNSENSDDIAVSILNNFIDLGGFDLDEALAVVEGESRRVVAACKSYVSKLPTVNDVRRDEVCSVCMEGFTRHNRDGENKRVPCGHVYHSNCITLWLEHCSSCPLCRRHISF* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3181 119 Pfam Ring finger domain 70 114 IPR001841 -
Pvu2g3181 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 118 IPR013083 -
Pvu2g3181 119 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 30 118 - -
Pvu2g3181 119 ProSiteProfiles Zinc finger RING-type profile. 70 114 IPR001841 -
Pvu2g3181 119 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 30 118 - -
Pvu2g3181 119 SUPERFAMILY RING/U-box 62 118 - -
Pvu2g3181 119 SMART ring_2 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3181 Pvu-Chr2 47096482 47096966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3181 22 117 C3H Transcription Factor Family AT5G01980 37.624 5.62e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3181 - K22378 gmx:102669154 167.933