Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3180 ATGGGTCGTCGCAAAATTGAAATGACTGCAGTGAAGGATCCTAATACGAGGCAAGTGACGTTTTCTAAGCGTCGAGCAGGTTTATTCAAAAAGGCGAATGAATTATCTATACTGTGTGGGGCAGAAATTGCCATTGTTGTGTTCTCAATTGGAAACAGACCTTACTCTTTTGGGCACCCTGCTGTTGATCTTGTTGCAGCCAAATTTCTTGAACAAGAAATCAAATCAAATGATGTCAAACAAAACAGTGTTGAAGTTGGGGACATGGATAGGTTGAATCAACAATTGCTAGAGATTCAAAGCCAACTACTTGTGGAGGAAAAGAAGGGCTTAGAGCATGATCAGATACTAAAACAACACTCATTTAAACAATTACAAGATGCATATTCAGAATTGCAAATTAGGGTGAAAGATTATATTGATGCGATTGAGGTATCAGAATGTTTGATTCTACTTGCACAAGAACCCGTAGTCCAAACAACAAAACAGGTGAAGAAAAGAAGAAAGAATTGA 513 0.3801 MGRRKIEMTAVKDPNTRQVTFSKRRAGLFKKANELSILCGAEIAIVVFSIGNRPYSFGHPAVDLVAAKFLEQEIKSNDVKQNSVEVGDMDRLNQQLLEIQSQLLVEEKKGLEHDQILKQHSFKQLQDAYSELQIRVKDYIDAIEVSECLILLAQEPVVQTTKQVKKRRKN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3180 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g3180 170 Coils Coil 89 109 - -
Pvu2g3180 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu2g3180 170 PANTHER MADS BOX PROTEIN 2 164 - -
Pvu2g3180 170 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Pvu2g3180 170 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 164 - -
Pvu2g3180 170 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Pvu2g3180 170 Coils Coil 122 142 - -
Pvu2g3180 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g3180 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g3180 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g3180 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3180 Pvu-Chr2 47094019 47094531 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3180 1 154 Type I MADS-box Gene Family AT2G34440 35.673 1.05e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu2g3180 SRF-TF 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3180 - - gmx:100791127 241.891