Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3158 ATGAATAAGATGAGGAACTTGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCAAAGCTGGAAGAACATCAACTGTGTGGATCGAAACAGTGCCCTGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTTCCAGCAGGAGTGAAGTTTGATCCAACGGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTTGAAGCAAAGAACATGAAATCACACCCATTGATAGATGAGTTCATTCCCACCATTGAAGGAGAAGACGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGCTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCTTACACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGATGGCACAAGACAGGTAAGACCAGACCAGTGATGGTGAATGGCACACAAAAGGGTTGCAAGAAGATTCTAGTGCTCTACACCAACTTCGGGAAGAACAGAAAACCTGAAAAGACGAACTGGGTGATGCACCAGTACCATCTGGGTCAGCACGAGGAAGAAAAAGAGGGAGAGCTTGTGGTGTCGAAGATATTCTACCAGACACAACCGAGGCAATGCAATTGGACAGATAGAAGTGCCACAACTGGTGAAGGAAGTGGAGAACAACAAGGCAACACTAGTGGAAGAAGAGACAGTGGAAGTGGGAGTTGTTCTTCTAAGGAAGTTGTCACTCACAGAGATGAAATGTCTGCTATCATTGGAGTCCCTCAAATAACACCCTTCAACACTGCCTTGGACATTCAACAACTCAAATCCGACCATTTTAGCTTCATTCCATTCAGAAAAAGCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACAGGAAGAGAAGTGCAAGCATCAAGGTCGTGTGAGGAAGTACATGAAGGACATAACATTGTAGCACATCATCATCAACAACAGCAGCAAAATCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTAGGCCTTCGCATCCCATCTCCACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATCATCCTAGATGACAACTCCTACCATGTCTCCACAATCATGCTTCAAAATGAAAATTTCCAGCAACAGCAGCAACACCATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGCTGCACCTCAACTGATATCAAAGAGGAGTCATCCATTACTAACCAACAAGAAGCTGAATGGTTGAAATATTCTTCTTTCTGGCCAGACCCTGGTAACCTGCACGATCATTCATGA 1344 0.4568 MNKMRNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGTQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWTDRSATTGEGSGEQQGNTSGRRDSGSGSCSSKEVVTHRDEMSAIIGVPQITPFNTALDIQQLKSDHFSFIPFRKSFDEVGIGEASTGREVQASRSCEEVHEGHNIVAHHHQQQQQNQHAHQQIATTAFHISRPSHPISTIISPPPLHHASIILDDNSYHVSTIMLQNENFQQQQQHHHKLGGRSASGLEELIMGCTSTDIKEESSITNQQEAEWLKYSSFWPDPGNLHDHS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3158 447 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Pvu2g3158 447 MobiDBLite consensus disorder prediction 216 251 - -
Pvu2g3158 447 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Pvu2g3158 447 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Pvu2g3158 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 427 - -
Pvu2g3158 447 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 427 IPR044799 GO:0003700
Pvu2g3158 447 MobiDBLite consensus disorder prediction 216 248 - -
Pvu2g3158 447 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3158 Pvu-Chr2 46920250 46926401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3158 4 437 NAC Transcription Factor Family AT5G56620 54.881 2.23e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu2g3158 NAM 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3158 - - gmx:100794811 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3158 2 46920250 46926401 Pvu2g3158 2 46920250 46926401 ECH
Pvu2g3158 2 46920250 46926401 Pvu4g1838 4 45454789 45460592 PCT