Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3149 ATGATGTTGGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCGTGGCCGCTCATCCACGAATCCTCACCGGAGATGTTTTCGCCGTACGCCGCCAATGCCGATTACTCTCCGTACTCTCTGCAAGAAGCGCTCAACGCGCTTCAGCACTACGACTCTACAGATGCCGAGTCAGACTCCGATGTTCCGTCTCTGGAACCGGAAGTCCCGGTTGACGCCTATTCCTGCGATCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGCGAAAAGGCTCGCCGCCGTGATCCCCGCAAGTATCACTACTCCGGCACGGCGTGCCCCGATTTTCGCAAGGGGAGTTGCAAGAAGGGTGACGCATGCGAGTACGCGCATGGGGTTTTCGAGTGCTGGCTCCACCCGGCTCGTTACCGTACTCAACCGTGCAAGGATGGCACCAGTTGCCGCCGGCGGGTGTGTTTCTTTGCCCACACGCCCGAGCAACTAAGGGTTCTGCCGCAGCAGAGTCCACGCAGTGCTGACTCGTACGACGGGTCTCCTTTAAGACACGCGGTCGAGTCCTCCAAGACGGTGGCGCCCTTCGTTTCTTCTCCCGGGTCGGTGTCGCCGCCGGTGGAGTCTCCGCCTATGTCGCCGATGACTCGTTCGGGGTCTGTGTGTGTTAACGAGATGGTTGCCTCGCTTAGAAACTTGCAACTGGGGAAGGTTAAGTCGTTGCCTTCTTGCTGGAATGTTATAGGGTCTCCCGGGTTCGGATCACCCAGAGGACCCGTGATCCGACCCGGATTCTTCAGTCTCCCTTCGACCCCAACGCAGGCTCCTGTTCGCGGCGGGGTGAACTACTTCGACCACTGGGATCAGAGTTGCCAGGAAGAGCCTGTGATGGAGAGGGTGGAGTCTGGAAGAAACATAAGAGCGAGGATGTTTGAGAAGTTGAGCAAAGAGAATGTTCTGGACGGGTCGGGCTCGGGGGAGCCCGTTGCTCCGGATGTCGGGTGGGTCTCGGAGCTGGTGAGTCGCTGA 1080 0.5935 MMLGETHRANPTVHVPPWPLIHESSPEMFSPYAANADYSPYSLQEALNALQHYDSTDAESDSDVPSLEPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAVESSKTVAPFVSSPGSVSPPVESPPMSPMTRSGSVCVNEMVASLRNLQLGKVKSLPSCWNVIGSPGFGSPRGPVIRPGFFSLPSTPTQAPVRGGVNYFDHWDQSCQEEPVMERVESGRNIRARMFEKLSKENVLDGSGSGEPVAPDVGWVSELVSR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3149 359 Gene3D - 121 184 - -
Pvu2g3149 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 357 - -
Pvu2g3149 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
Pvu2g3149 359 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Pvu2g3149 359 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Pvu2g3149 359 PANTHER UNKEMPT FAMILY MEMBER 7 357 IPR045234 -
Pvu2g3149 359 MobiDBLite consensus disorder prediction 206 233 - -
Pvu2g3149 359 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3149 Pvu-Chr2 46820668 46822746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3149 65 257 C2H2 Transcription Factor Family AT5G12850 49.754 1.88e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu2g3149 zf-CCCH 7.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3149 - - gmx:100808676 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3149 2 46820668 46822746 Pvu2g3149 2 46820668 46822746 ECH