Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3120 ATGGAAGGCCATGATACGCGGAGGGATAATGGTGGAAATGGAGTGGTAGTGCCGCCGTGTACTTGCTCGCGCGACGAATTTCGCACACGTGGCGGTGGAAAAGTATTATCGCGAGTTGCTGCTGCTGCTAGAAACTGTTCTTCTGCTTCAAAACATGACATGGCTGTGACGCGGAACGTTAAGAAAAAACAAAAGCGTAAAGGTCTTCAGGAGCTGTTCACAGCCGATTACATCGTGAACAGAGTGTTACGGAAGGATGGTCCTCCGCTTGGTCAGGAGTTTGACTTTCTTCCTTATGGACCCAAATACTTCACTTCTGCTTGTCAAGAGGACCAAGGATCTTCAAAAAGGAAGAAGGGTTCCAAGAATGCAATTCGAAGTCTCGCTGATTGTAATATGAAAGCACCTGTGAAGAAGCATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCCGGAGACGTTCCAATTGGTTTTGGTGCCGATGGCCAAGAAGTTCCTTTACTTTCAAATTCTATAGGTCAGAAACTGATCCATGAGAACAACAGGTCACGGAAAACAGTTAACAGGAATGTAATGCCAAAAAATAAAACACAGAATAAGAGAAATAAATCACAGGATAAGAGGAAGACTTCCATGCAAAGAAGAGTGGGGGAATTGAACCTATATGTGACTCAGAATCAGTCACCAAACGAAAACTGTGGACTAGCTCTGGATAATTCAATATCTGAAGAGGGAGTTGATCGCGTTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAGGAACCAATCTGTCTAGGTGTTCTAATCATCTTGCGGCCAGTGGCATGCTTGCCTGCTCACTGAGTAAAGATGCACTAGTGAAGTTTCCTCCAGATACCGTCAAGATGAAGAAACCTATCCATTTGCAACCTTGGGACTCCTCACCAGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTATAATTGTTGAGATTTGTCCCTTCACTCTTGACGAGCTTGTTCAAGCTTTTCATGACAAGGACTCAATGTTACTTGGCAAGATTCATGTGGCCCTTCTCACACTTCTTTTATCTGACATTGAAGTAGAGCTTACTAATGGTTTTTCACCTCATTCAAATAAATCTTGTAACTTTCTTGCATTACTTCACTCGGTTGAAAGTGAGGAATACTCCCTGGACTTCTGGAGAAGATCTCTAAATTCTCTTACTTGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCGAAGAAAGGCTCCTTACGCAGAGATGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAATATCTTGTCAGAGAGAGGAAACACTGGATGCAAAGTGGTTGAGCTGGCGAAGTCAATGCAGAATGTTGAATTAAACCTTGCGAGCACTACAGAGGAGCTTGAGTCTTTAATTTGTTCTACGCTTTCAAGTGATATTACTTTATTTGAGAAGATTTCATCAACTGCTTACCGACTGCGTATGAGCACAGTTATGAAGGACAGTGATGAATCTCATTCAGATACAGAGGATTCTGGTAGTGTTGACGATGAACTTAATGACACTGATACATGCAGCAGTGCTGATGATTTTGAAAATGATTCAATAGATTCCAGTATAAGAAAATTGAAGAGTGTAAACAGTCATAAAAATAATATGTTGAAAATATACACTGAAATTGACGAGAGTCGTCCGGAAGAAGCGTGGTTATTAGGACTCATGGAGAGTGAATATTCAAACTTAAACATTGAAGAAAAGTTGAATGCATTGGCAGCTTTAACTGATCTTGTTTCCTCTGGATCCAGCATTAGGATGAAGGATTTGTCTAAAGTCACAGCTGATTGCAATTCTAGCATCCAATTACGAGGGTCTGGAGCTAAAATAAAGAGATCAGCAGTAAAGAAACCTGGGCCACTTTTGAACCATAAAGTACACTTGAATTCTGATCCCTGTACTGTAGACTCCTCATCATTATTTTCAAGATTCCACAGTTTTGAAGCTTATTTCCAAAAGGGAAAAGATTCATCTATTTCACATCCCGTTCAATCGGTGTTTTTGGGATCAGATCGTCGGTACAATAGATATTGGCTTTTCTTGGGCCCATGTAACGTAGATGATCCTGGTCACCGGAGGATATATTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTATGGAGGCGTTGTGTGCTTTGATGTCAGTTCTGGACGACAGAGGAAAACGGGAGGCTCTTCTTATTGAATCATTGGAAAGGAGACAAACATCACTATGCAGAACTATGGCAAAGATTAATGTTAATAGTACTGGAATGGGTTCTATGTCTCATTCTGATCAATCTGAACTGGATATGGTCACAGATGACAGTTATTCTCCTGCATCTGATGTAGACAACCTGAACATGACTGAGACTGCTAAAGACTCTTTGCCTTCAGCTGGGGCTGTGGTAATTGAGGCTGGAAAGAAAGTAGAGGATCAAATTAAAAAATGGATCCGTGTTCAAGAATACGATTCTTGGATTTGGAATTTTTTTTATTCGGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATATGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGACGAGAGACACTGTAGAATTTGCCATATGACATTTGAGCTTGATTTTGACCTAGAAGAAAGATATGCAATCCACGTAGCCACATGCAGGGAGAAAGAAGACAGTGATGCATTTCCTAATCATAAAGTGCTGCCATCACAGATTCAATCTCTGAAAGCTGCAGTTTATGCTATCGAGTCTGTTATGCCTGAAGATGCCCTCGTTGGTGCTTGGAGGAAATCTGCACATAAACTATGGGTGAAACGACTCAGACGCACCTCAACTTTAGTAGAGCTTTTAAAGGTTCTTGATGATTTTGTTGGTGCCATCAATAAGGGCTGGTTGTTTCAATGCAAATTTCCAGATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACATCATCTGCCCTTGGCCTGTGGTTAGTGAAGTTAGATATCATAATTGCTCCCTACCTGGACAGAGTTCATCCACTGAAAGCGCAAGGAACCAGTCAACATGGTCCTTGGCGATAA 3237 0.4099 MEGHDTRRDNGGNGVVVPPCTCSRDEFRTRGGGKVLSRVAAAARNCSSASKHDMAVTRNVKKKQKRKGLQELFTADYIVNRVLRKDGPPLGQEFDFLPYGPKYFTSACQEDQGSSKRKKGSKNAIRSLADCNMKAPVKKHGIGKGLMTVWRATNPDAGDVPIGFGADGQEVPLLSNSIGQKLIHENNRSRKTVNRNVMPKNKTQNKRNKSQDKRKTSMQRRVGELNLYVTQNQSPNENCGLALDNSISEEGVDRVSMLIDDEELELRELQEGTNLSRCSNHLAASGMLACSLSKDALVKFPPDTVKMKKPIHLQPWDSSPEIVKKLFKVFHFIYTYAIIVEICPFTLDELVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHSNKSCNFLALLHSVESEEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKKGSLRRDVLNKELNLLVNYGLCPGTLKSELFNILSERGNTGCKVVELAKSMQNVELNLASTTEELESLICSTLSSDITLFEKISSTAYRLRMSTVMKDSDESHSDTEDSGSVDDELNDTDTCSSADDFENDSIDSSIRKLKSVNSHKNNMLKIYTEIDESRPEEAWLLGLMESEYSNLNIEEKLNALAALTDLVSSGSSIRMKDLSKVTADCNSSIQLRGSGAKIKRSAVKKPGPLLNHKVHLNSDPCTVDSSSLFSRFHSFEAYFQKGKDSSISHPVQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTMEALCALMSVLDDRGKREALLIESLERRQTSLCRTMAKINVNSTGMGSMSHSDQSELDMVTDDSYSPASDVDNLNMTETAKDSLPSAGAVVIEAGKKVEDQIKKWIRVQEYDSWIWNFFYSDLNVVKYGRRSYMDSLARCKSCHDLYWRDERHCRICHMTFELDFDLEERYAIHVATCREKEDSDAFPNHKVLPSQIQSLKAAVYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLKVLDDFVGAINKGWLFQCKFPDGVVEEIIASFASMPHTSSALGLWLVKLDIIIAPYLDRVHPLKAQGTSQHGPWR* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3120 1078 Coils Coil 481 508 - -
Pvu2g3120 1078 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 716 789 IPR028941 -
Pvu2g3120 1078 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 50 1065 IPR044977 GO:0006357
Pvu2g3120 1078 MobiDBLite consensus disorder prediction 532 564 - -
Pvu2g3120 1078 MobiDBLite consensus disorder prediction 532 547 - -
Pvu2g3120 1078 ProSiteProfiles DDT domain profile. 320 379 IPR018501 -
Pvu2g3120 1078 MobiDBLite consensus disorder prediction 185 219 - -
Pvu2g3120 1078 MobiDBLite consensus disorder prediction 548 564 - -
Pvu2g3120 1078 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 600 638 IPR028942 -
Pvu2g3120 1078 PANTHER OS07G0619600 PROTEIN 50 1065 - -
Pvu2g3120 1078 SMART testlast3 320 379 IPR018501 -
Pvu2g3120 1078 Pfam DDT domain 323 376 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3120 Pvu-Chr2 46561778 46571782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3120 247 1065 Homeobox Transcription Factor Family AT1G28420 25.755 3.59e-68 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pvu2g3120 WSD 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3120 - - gmx:100792062 1852.03