Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3110 ATGGGGATTTGCTTCAGCATTGAAGACAAGAGCCACCTCTCCGTTTCCGATTCCAACGCCAAACCTAAGCCTCCAGGTCAAGAATCTGTCGCTTCGATTGTTTCCATAAACATCAAAGATCTCCGCGAAGGTGCTGGATATAGCAATGTCGATATTTTCACGTACGAGGAACTGAGGCTCGCAACGAAGCATTTTCGTCCCGATTTCATCTTGGGAGAAGGAGGCTTTGGAGTTGTATATAAAGGCGTCATAGACCACAGTGTGAGGTCGGGTTACAAGGCCACTGTGGTCGCCATTAAGGAACTTAATCGCGAAGGATTCCAAGGAGACAGGGAATGGCTCACCGAAGTCAACTATTTAGGTCAATTCAGTCACCCTAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGAACACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCGAGGGGTCTGGCTTTTCTTCATGGTGCAGAAAGACCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAATGCGAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGCCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCCGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGTGATGTTTATGGTTTTGGGGTGGTGCTACTTGAAATGCTTATTGGTAGAAGGGCACTAGACAAGAGCAGGCCGAGCCGAGAACACAACTTGGTCGAGTGGGCCCGTCCGCTTCTGAATCATAATAAGAAACTTTTGAAAATTTTAGACCCAAGATTAGAGGGACAATATTCAAGTAAAACTGCATTGAAGGTAGCCCATTTGGCATACCAATGTCTTAGCCAAAACCCGAAAGGAAGACCGCTAATGAGCCAAGTTGTTGAAATTCTCGAAAACTTTCAGTCAAGTGGGGAAAATGAGGAAGATCAAATGCTTCAAACTGCTGGTAGCAGTGGTGTAACCCTTTATGAGGTTCCCAAGGCCAGCAATGACACTCCAACTTAA 1140 0.4535 MGICFSIEDKSHLSVSDSNAKPKPPGQESVASIVSINIKDLREGAGYSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHSVRSGYKATVVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPRLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSSGENEEDQMLQTAGSSGVTLYEVPKASNDTPT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3110 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 26 376 - -
Pvu2g3110 379 PANTHER OS01G0588500 PROTEIN-RELATED 26 376 - -
Pvu2g3110 379 ProSiteProfiles Protein kinase domain profile. 65 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu2g3110 379 Gene3D Phosphorylase Kinase; domain 1 40 147 - -
Pvu2g3110 379 MobiDBLite consensus disorder prediction 351 379 - -
Pvu2g3110 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Pvu2g3110 379 SUPERFAMILY Protein kinase-like (PK-like) 47 343 IPR011009 -
Pvu2g3110 379 CDD STKc_IRAK 71 345 - -
Pvu2g3110 379 Gene3D Transferase(Phosphotransferase) domain 1 148 366 - -
Pvu2g3110 379 Pfam Protein tyrosine and serine/threonine kinase 71 342 IPR001245 GO:0004672|GO:0006468
Pvu2g3110 379 ProSitePatterns Protein kinases ATP-binding region signature. 71 100 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3110 Pvu-Chr2 46482532 46487865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3110 19 342 Glycoside Hydrolase AT3G07070 48.624 1.30e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu2g3110 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3110 - - gmx:100800465 713.761