Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3092 ATGGATGTGCCACAAACTCCAACCCCCTCTCCTCATTTGTATCCACAACAACTTCAACTTAAACTTTACCAAGCCTTCATATTCTCCATTCCCATACTCTTTTCCATCATTCTGGTTCTCTTGTTTTACTTGTTCTACCTCAAAAAGAGAGCTGCATCTCTCTCATCACCACCTCTCCACATACTTACCACCACTGCTAATCCTCAAACTACCTATCCTTACCCTTCACAACCTTGCCGATTAGATCTGACAGTACAATTTCTTGACAAACTTCCAAGAATTTTGTTTGATGAGGATTTTGGAACAAGAGATTCAGTATGTTGTGTTTGCCTTGGAGAATTTGAACTGAAGGAAGAGCTGCTACAAATTCCTTACTGCAAGCATGTGTTTCATATAAGCTGCATATGCAACTGGTTGCAATCAAACTCCACGTGTCCACTTTGTAGATGTTGCATCATTCCCTCTACCAAGTTCCTTAATCCAGCCCCAACTATTGTATCAGACCCACCACACCAAGGTGGAACTTCAACCTCTTCATCACACATCATCTCAATGCCTCAGTAA 564 0.4149 MDVPQTPTPSPHLYPQQLQLKLYQAFIFSIPILFSIILVLLFYLFYLKKRAASLSSPPLHILTTTANPQTTYPYPSQPCRLDLTVQFLDKLPRILFDEDFGTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCICNWLQSNSTCPLCRCCIIPSTKFLNPAPTIVSDPPHQGGTSTSSSHIISMPQ* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3092 187 MobiDBLite consensus disorder prediction 167 187 - -
Pvu2g3092 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 154 IPR013083 -
Pvu2g3092 187 Pfam Ring finger domain 107 149 IPR001841 -
Pvu2g3092 187 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Pvu2g3092 187 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 4 169 - -
Pvu2g3092 187 SUPERFAMILY RING/U-box 85 160 - -
Pvu2g3092 187 MobiDBLite consensus disorder prediction 169 187 - -
Pvu2g3092 187 SMART ring_2 107 148 IPR001841 -
Pvu2g3092 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 4 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3092 Pvu-Chr2 46286609 46288606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3092 19 167 C3H Transcription Factor Family AT1G33480 43.421 1.29e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3092 K19039 - pvu:PHAVU_002G300500g 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3092 2 46286609 46288606 Pvu2g3092 2 46286609 46288606 ECH