Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3087 ATGGACGATACTGAAACAAAGCAACGAATCGAGGAAACAGTTCGCAGGATTTTGCAAGAGTCGGACATGGACGAGGTTACGGAGTCTAAGATTCGAAAGCAGGCTTCCGAGCAACTTGGTCTCAACCTGTCTCAGCCCCATTTCAAAGCCTTCGTGAAACAGGTAGTGGGGGCTTTTCTCCAAGAAAAACTACAAGAACAAGAAGAAAATGATGAGAAAGAAGATGAAGAAGAACAAGGAGTTTCCAAGGGCAAGGAGTACGATGATGAAGGCGATCTCATCATCTGCAAGCTTTCAGAGAAGAGAAGAGTGACCATTCAGGATTTCAGAGGGAAAACGTTGGTGTCCATTCGCGAGTACTATAAAAAAGATGGCAAGGATCTTCCTACTTCCAAAGGAATAAGTTTGACCGAGGAGCAGTGGTCCGCCTTCAAAAAAAATCTGCCCGCCATAGAAAAAGCCATTAGTAAAATGGAATCTCGTTGA 486 0.4424 MDDTETKQRIEETVRRILQESDMDEVTESKIRKQASEQLGLNLSQPHFKAFVKQVVGAFLQEKLQEQEENDEKEDEEEQGVSKGKEYDDEGDLIICKLSEKRRVTIQDFRGKTLVSIREYYKKDGKDLPTSKGISLTEEQWSAFKKNLPAIEKAISKMESR* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3087 161 MobiDBLite consensus disorder prediction 63 86 - -
Pvu2g3087 161 SUPERFAMILY DEK C-terminal domain 3 60 - -
Pvu2g3087 161 Gene3D - 2 63 - -
Pvu2g3087 161 Gene3D Transcriptional Coactivator Pc4; Chain A 84 161 IPR009044 GO:0003677|GO:0006355
Pvu2g3087 161 SUPERFAMILY ssDNA-binding transcriptional regulator domain 95 157 IPR009044 GO:0003677|GO:0006355
Pvu2g3087 161 Pfam Transcriptional Coactivator p15 (PC4) 96 147 IPR003173 GO:0003677|GO:0006355
Pvu2g3087 161 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 161 IPR045125 GO:0003713|GO:0060261
Pvu2g3087 161 Pfam DEK C terminal domain 5 60 IPR014876 -
Pvu2g3087 161 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP 4 161 - -
Pvu2g3087 161 PIRSF RNA_polymII_KELP 1 161 IPR017415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3087 Pvu-Chr2 46256666 46258825 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pvu2g3087 DEK_C 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3087 K25815 - gmx:100305633 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3087 2 46256666 46258825 Pvu2g3087 2 46256666 46258825 ECH