Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3083 ATGGAGGCGGATTTCGTGACCAATGATATTCTCTCACTCACACACGATGCTTTTGATGCCAACGATAATGATGATGAAGCTATGGAAGGGGAAACATGTGGAATATGCATGGATATGGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACCAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAACAAAGTTGAGGATGATTCACTCCTCAGAGATGACGATGACTGGTCCATTGAAGGGAAGAATAACACACTGTCATTTCCCTCATACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGACTGCAAGGTTCGAAATGGGTTGGCTACTGTTGAAGGAGATTCTGATCTCAGTACATCAATAGCATGTGATTCATGTGATATATGGTATCATGCATTCTGTGTGGGATTTGATACTGAAAGTATGTCAGACAATACATGGTTATGCCCCAGGTGTGTAGCAGATGATGTTTCTAAAGGAGCATCTAATTCAATGGAGAGGACAACCGTGGATTGTAATGCAGACAATAGTAACAATGAATGCCATGCTGAGGATTCCTTTTCAGGAAAAGTGTCTGTCTCTGTTGCTGATACAGGAGAAACAGCTGTTGTTGTCTCGATGGTTGATAGAACAAAATGGGTTCCAGCAACAAGTGAGAAAAGCCTATTGCCTTTTGAAGTTGGTGGGGATCCAATGACTGAATCATGTATTTTAATGTTTGACACAAATGATCAGCAAAGTGGCGAAATCAGGACAAATTCATTACCGATCATGGAGGAAGAAGAACTGGAACTGTCTTTATCAAACAATTTATCCTGTAGCCTAACTTCTATGTCCTTAGTGCATAATGATTTAGAGAAAAGTACCAGTGGAGCAATGAATGAACCCAGTCCCTTGGATGGAACCAAGTTTTTGGATGAATCCCATACCAAAACTAGTCCATCCAGAATTGAATCCAATATGGGTCTTGATCTTGGTTTGTCAGTGGGCTCTTTTTTATCTGTTGATAATGCAGACAAGAGTGAACCAAAAGATCAAGCAACCATTGTCCCATGCTTGACTTCAGAGGAATGTTTTTCAAAAGGAGATGATATTGAAGTCAATGCTTGTAAAGACAATGTCAGAGTGGCTGGTGGAAAGAGAAAGCATGCTGATTACAGTTCTGAGCAAGTTCATATAAAGGCTGAGGATGGAGATGCTGAGCCTGAACTTCCTGATGAAGTTGTGCCAAAGAAAATTAAAGCTACTGATAGGCAAATGAGTAATACTAATGACACAGCCAATGATCATCTTTTAGAAAATGCTACAAAACACTCTGCTTTAAAACATCCTCCAACAAAGCCAACTGTCACACCAGATATAATGAATATTGTTAAAGGGACGGACCGAAGGCTTTCCAAGGGACATAGTGACACTAATGCTTGTGACAAGTCATCTGAAAGCAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAAATTCCGAGGATAGAGAATCATCCTTGGTAGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCCATAAACTTCGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATGAAGGCAAAGAAGTCAATGTTGCAGAAAGGCAAAGTGCGTGAAAATTTAACAAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTCTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGATGGTCCAGAATCAAAGCAAGCCTCGGAATGTCAAACCAAGAATCCTATACTTTCGAGGTTGTATTTAGCAGATACATCTGTTTTCCCCCGGAAACAGGATGTGAAACCTCTCTCTGTGCTTAAAACTGTTGATAACTCTGAGCAAACTAAACAAAACAACCCATCAGAGAAAGTACCAAATCTATCCGTTAATAACAATACTATTAAAGCAACAGATGTAAACTATCTCTTATCAAAGATCAGTTTTGTTTCATCTGAAAAAAAAGTAGACAAGAAGATTGTTCACGGCCCAGTTGGTGATAATTCAACTTCTGGTAAAATACGTTTAAACAACCACTTAGAAAGGACACCAATCTCGTCAGCTGGTGCCAAAACTGGCACAAAGGAGTTAGGTCTTAAATCTGGTTGCATGAAGAATGATAAAAGAAAATGGGCCTTGGAGGTCCTTGCGAGGAAAACAGCTACAACCAGCGGAAACACAGCAAATGGAAATCAGGAAGAGAACGCAATATTTAAAGGACATTATCCTTTACTTGCCCAACTGCCAATTGATATGAGACCAACATTGGCACCTTCTCGCCACAATAAAATTCCTATATCAGTTAGGCAGACACAGCTTTACCGCCTGACAGAGCGCTTATTGAAGAACACAAATCTGTCTGTGATTCGCAGAACTGGTATTACAGAATTAGCTGTTGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAACAGCAAGCTTGTGTACTTGAACCTTTGTTCACAGGAGCTCTTGCATCGCACGAGTAACACAACATCTGATGTAGCCTCAGATACAAGTCCACCAGCCTCATCAGCAATGCTTACCGATCAACAATCAGAACTAAATACCGATGATCTTTCAGCTAACCCTGAAGTTGAAACAGCCTTGAAAAATGCTGGTCTGCTATCTGACTCCCCGCCTAGTAGTCCACATGACAACAGAGAAACATGTAATGGTGACATGTTGGGGCCCGATAATATACTTGAACTGGATTCGCATCCTGATCTAGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTATATTGGTGCTAGTGTTACACAGGTTTCAAAACCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACCATGAACTTGAAAAAGTCAGATATCGCTTTGGATTGTGCTGACTGTGAGGGGTCTGAAAGAAAGGAAGTGCCAGGAGAGGCATCCTGCTCACCAAATTGTCACAATGATGCAGTCCATAGGGATAGGGCTTCTGTTTCTTCTGAGCTCCTACCCTTTGAGAGTGCTGTTGAGCCACTTGACACAGAATTTGAAGACTTATTATACGGCCCAGACAAAGAACCACTCATAAAAAAATTTCCAGCCGGTGAATCAAGATCATTACATGGAGATGGCAAGACAGAAACTCTTAGCGTCGCTGATGACTACCATAATGATGTACAACATGCTTTGGATAATGCAGTAAAAGCTTCAGAACGGGGGAATGAGAATCTCACAGAAAAAGTTTCTGATACTACTATCACTGACCAATCTTCTAATATATCTGAGGCTGGCGAAAGTTTTCAACGGAAGGAAGAGAAATCTGATGTCACTGCCAAGCAGATTGACTCTGTAAATCATATAACTAAAAAGGTAGAAGTTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAGGTGGGCTGTTGCAAAAACAACTGAGAAAGTTATGAAGTATCATTGCAAAGCAAAGAATGCGAATTTTCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGAACAGAAAAAATTGA 3864 0.4027 MEADFVTNDILSLTHDAFDANDNDDEAMEGETCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSLLRDDDDWSIEGKNNTLSFPSYYIDENAVICLDGDDCKVRNGLATVEGDSDLSTSIACDSCDIWYHAFCVGFDTESMSDNTWLCPRCVADDVSKGASNSMERTTVDCNADNSNNECHAEDSFSGKVSVSVADTGETAVVVSMVDRTKWVPATSEKSLLPFEVGGDPMTESCILMFDTNDQQSGEIRTNSLPIMEEEELELSLSNNLSCSLTSMSLVHNDLEKSTSGAMNEPSPLDGTKFLDESHTKTSPSRIESNMGLDLGLSVGSFLSVDNADKSEPKDQATIVPCLTSEECFSKGDDIEVNACKDNVRVAGGKRKHADYSSEQVHIKAEDGDAEPELPDEVVPKKIKATDRQMSNTNDTANDHLLENATKHSALKHPPTKPTVTPDIMNIVKGTDRRLSKGHSDTNACDKSSESKGNMAGLRVKKIMKRNSEDRESSLVVQNLRKEIREAVRNKSSINFEDNHFDPKLLEAFRTAITGPKTELVNKLSPAAMKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDGPESKQASECQTKNPILSRLYLADTSVFPRKQDVKPLSVLKTVDNSEQTKQNNPSEKVPNLSVNNNTIKATDVNYLLSKISFVSSEKKVDKKIVHGPVGDNSTSGKIRLNNHLERTPISSAGAKTGTKELGLKSGCMKNDKRKWALEVLARKTATTSGNTANGNQEENAIFKGHYPLLAQLPIDMRPTLAPSRHNKIPISVRQTQLYRLTERLLKNTNLSVIRRTGITELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTSNTTSDVASDTSPPASSAMLTDQQSELNTDDLSANPEVETALKNAGLLSDSPPSSPHDNRETCNGDMLGPDNILELDSHPDLDIYGDFEYDLEDEDYIGASVTQVSKPKQEQNESKVKLVFSTMNLKKSDIALDCADCEGSERKEVPGEASCSPNCHNDAVHRDRASVSSELLPFESAVEPLDTEFEDLLYGPDKEPLIKKFPAGESRSLHGDGKTETLSVADDYHNDVQHALDNAVKASERGNENLTEKVSDTTITDQSSNISEAGESFQRKEEKSDVTAKQIDSVNHITKKVEVYIKEHIRPLCKSGVITADQYRWAVAKTTEKVMKYHCKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN* 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3083 1287 SUPERFAMILY FYVE/PHD zinc finger 147 186 IPR011011 -
Pvu2g3083 1287 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Pvu2g3083 1287 MobiDBLite consensus disorder prediction 1163 1182 - -
Pvu2g3083 1287 SUPERFAMILY RING/U-box 24 78 - -
Pvu2g3083 1287 MobiDBLite consensus disorder prediction 970 984 - -
Pvu2g3083 1287 MobiDBLite consensus disorder prediction 494 513 - -
Pvu2g3083 1287 SMART PHD_3 132 184 IPR001965 -
Pvu2g3083 1287 SMART ring_2 124 183 IPR001841 -
Pvu2g3083 1287 SMART ring_2 33 71 IPR001841 -
Pvu2g3083 1287 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Pvu2g3083 1287 PANTHER RING FINGER PROTEIN 41, 151 104 1284 - -
Pvu2g3083 1287 MobiDBLite consensus disorder prediction 924 958 - -
Pvu2g3083 1287 Pfam PHD-finger 148 184 IPR019787 -
Pvu2g3083 1287 ProSiteProfiles Zinc finger PHD-type profile. 65 186 IPR019787 -
Pvu2g3083 1287 Coils Coil 538 558 - -
Pvu2g3083 1287 MobiDBLite consensus disorder prediction 319 350 - -
Pvu2g3083 1287 MobiDBLite consensus disorder prediction 924 987 - -
Pvu2g3083 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 109 IPR013083 -
Pvu2g3083 1287 Pfam Ring finger domain 32 72 IPR001841 -
Pvu2g3083 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 189 IPR013083 -
Pvu2g3083 1287 PANTHER RING/U-BOX PROTEIN 104 1284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3083 Pvu-Chr2 46217667 46231318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3083 33 93 C3H Transcription Factor Family AT3G58030 38.095 1.81e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu2g3083 PHD 3.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3083 - - gmx:100808102 2115.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3083 2 46217667 46231318 Pvu2g3083 2 46217667 46231318 ECH