Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3070 ATGGCTACCTCAGCCATTTTTTGTGCTTTCTGTCTCCTTCTTTTCCATCTCCAAACCACAAGAGGGAATAACAACCAACAGCAACAGGCTATTTGTAAAAGCTTGAGATGCGGCAATTTAGACATTCAGTTTCCTTTCGGTCTGAAACACTCCGACCAAGATCCTCGCTGCAGGTATTTCCCAGTTCCAACTTTCCAACTTTCTTGCATCAATCGAACACAAACAGTTATAGAGCTCCCAGGTTTCGGGAACTTCGTCGTCAAAAACATCGATTACGACTCCCAAAGCATCAAAGTCAACGACCCCAATGGCTGCCTTCCAAAGCGGTTCTTACACCCCTGGAACCTTTCGGATTCACCTTTCACTTTGAACCCCTTGATTTATGGACCCTCTCCCTTTAACCTCACTTTCACGCGTTGCTCTTCCAACGTCACGGCCTCCCCTGGATTCCCGTTAAGGCCGGTTTCGTGCCTGAGCGACAACCCGAACTATTCGGTGATAGCTTCGTGGTCACGGCCCATTGAGTCGTCAACGGTCATGTCGGAACGGTGCCGAGTAATGGCTCATGCTCTTGTTCCTGTCCCGGTGTTGGACGTGTCCAAGTGGCCCTTCTGGTCCGATCTCAACACAAACCTTGAACTGGTGTGGACCGAACCCAGGTGCAGCCATTGTGCACTCACTGGTCAACTTTGTGGCTTCTCCAGTCAGAGTAATCGAAGTCTTCGAGTTGGGTGCTTTCCTAGGGACTCCGGCAAAGGTCTTTCGAGGAGTGCGAAGTATGGGTTAGCCATTGGAGTGGGAATACCAGGTCTGTTATGCTTCATCGGAATTTCTTGCTTTGTGTGCGGCAAGGTTAGGATGCTGAGCCACCGTCGCCGTCGCTCACATCTTCCCATCACCATTTCCCTAGAACCCGTTCCTTTTGTAGCGGGTCTTGACGGCGCCACAATTGAAAAGTATCCGAAAACTCTGATCGGAGAGAGTGGTCGGTTATTGAAGGCGAACGACAACACCTGCGCAATTTGCCTCTCTGAATATCAACCCAAAGAGACGCTAAGGAGCATTCCGGAATGTGACCATTATTTTCACGCAGATTGCATAGACGAGTGGCTGAAGTTGAACGCCACCTGCCCCCTCTGCAGGAATTCCCCCGACACTTCTACACCTTCTTCTTCTTTCTCTCCCACTTCCTCCTCGTTCTCCTCTCCACACTAG 1215 0.5029 MATSAIFCAFCLLLFHLQTTRGNNNQQQQAICKSLRCGNLDIQFPFGLKHSDQDPRCRYFPVPTFQLSCINRTQTVIELPGFGNFVVKNIDYDSQSIKVNDPNGCLPKRFLHPWNLSDSPFTLNPLIYGPSPFNLTFTRCSSNVTASPGFPLRPVSCLSDNPNYSVIASWSRPIESSTVMSERCRVMAHALVPVPVLDVSKWPFWSDLNTNLELVWTEPRCSHCALTGQLCGFSSQSNRSLRVGCFPRDSGKGLSRSAKYGLAIGVGIPGLLCFIGISCFVCGKVRMLSHRRRRSHLPITISLEPVPFVAGLDGATIEKYPKTLIGESGRLLKANDNTCAICLSEYQPKETLRSIPECDHYFHADCIDEWLKLNATCPLCRNSPDTSTPSSSFSPTSSSFSSPH* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3070 404 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 402 - -
Pvu2g3070 404 SMART ring_2 339 380 IPR001841 -
Pvu2g3070 404 Pfam Wall-associated receptor kinase galacturonan-binding 32 101 IPR025287 GO:0030247
Pvu2g3070 404 MobiDBLite consensus disorder prediction 383 404 - -
Pvu2g3070 404 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 402 - -
Pvu2g3070 404 CDD RING-H2_PA-TM-RING 338 381 - -
Pvu2g3070 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 386 IPR013083 -
Pvu2g3070 404 ProSiteProfiles Zinc finger RING-type profile. 339 381 IPR001841 -
Pvu2g3070 404 Pfam Ring finger domain 337 381 IPR001841 -
Pvu2g3070 404 SUPERFAMILY RING/U-box 332 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3070 Pvu-Chr2 46108979 46113073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3070 32 384 C3H Transcription Factor Family AT2G46495 36.667 1.65e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3070 - - gmx:100810240 567.77