Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3054 ATGGGTGACACAGTTGTTGAGGTACCCAAAAAGAGGGGAAGGGGCAGAAAGGCCCTGAAGGAGAAAATCCCATCAACGAACGAGGCCAACATCATCGCTGGGAAGGTTTCTGAGTCCTCAACGACACCAATTTCACCGTCGTCGAAACAAGATTCCAAGAAGCAGCAATCTTTCGAGAAAGAATTGCTCGAGATGCAGGAAATGCTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGGCCAGAGACGATGCCCTCAAGCAGAAGGACGAAGAGCTCGAAAACCGTGGCCGTGAACAAGAGAAGCTTCAAGTTGAGCTGAAAAAACTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGATGAAAGATAATGAGACAAAAAAGGACAAGAAGAAGAAGGGGGTCTCTGAGAAGAAAAGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAACGAACCCAGAGGCAGAATTTAAGGAAACTTCTAACATGTTGGGGGCTAAATGGAAGACTGTCAGTGCAGAGGAGAAGAAGCCTTATGAAGAGAAATATCATACTGAGAAAGAAGCTTATTTGCAAGTGATTGCAAAGGAAAAACGTGAGAGTGAGGCAATGAGATTGTTTGACGAGGAGCAGAAACACAGGACTGCCATGGAATTGCTTGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGACCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCACCCCATGTCTGCTTATTTCTTGTTCACTAACGATAGGCGAGCAGCTCTTGTTGCCGAGAACAAGAATTTCTTGGAGGTTCCAAAGATCACAGCCGAAGAGTGGAAAAGCATGACAGAGAAACAAAGGAGACCCTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATGCTTTAGAAATGGAGGCTTACAAGCAGAAGAAAGATGAGGAAGCTGCCCACATCATGAAGGAGGAGGAGGAGCATTTGAAACTTCAGAAACAAGAAGCCTTGCAAATGCTGAAGAAGAAGGAGAAAACTGATAATATAATCAAGAAAACAAAACAGAATCGTCAGAAGAAGAAACAAAACAAGGAAGACAAGAATTCTGATCCAAACAGGCCAAAGAGGCCTCCATCATCGTTCATCGTATTCTGCAAAGAAGCAAGGAAAACTTTACAGGATGAAAGACCAGGACTCAACACCTCAACCCTCAATGCACTTGTCTCGTTGAAGTGGAAGGAACTGAGTGAGGAAGAGAGGCAAGTCTGGAATGGCCAAGCAGCTGATGCAATGGAGGCGTACAAGAAGGAAATGGAGGAATACAACAAGTCTCTTTCTGCAATTGCAAACCAGGAAACCGAATAG 1416 0.4407 MGDTVVEVPKKRGRGRKALKEKIPSTNEANIIAGKVSESSTTPISPSSKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKARDDALKQKDEELENRGREQEKLQVELKKLQKLKEFKPTMNLPVMKDNETKKDKKKKGVSEKKRPSPPYILWMKDQWNEIKKTNPEAEFKETSNMLGAKWKTVSAEEKKPYEEKYHTEKEAYLQVIAKEKRESEAMRLFDEEQKHRTAMELLEQYMQFKQEAEKETKKNKKEKDPLKPKHPMSAYFLFTNDRRAALVAENKNFLEVPKITAEEWKSMTEKQRRPYEEMAKKNKEKYALEMEAYKQKKDEEAAHIMKEEEEHLKLQKQEALQMLKKKEKTDNIIKKTKQNRQKKKQNKEDKNSDPNRPKRPPSSFIVFCKEARKTLQDERPGLNTSTLNALVSLKWKELSEEERQVWNGQAADAMEAYKKEMEEYNKSLSAIANQETE* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3054 471 MobiDBLite consensus disorder prediction 30 52 - -
Pvu2g3054 471 Pfam HMG (high mobility group) box 262 328 IPR009071 -
Pvu2g3054 471 Pfam HMG (high mobility group) box 147 208 IPR009071 -
Pvu2g3054 471 Pfam HMG (high mobility group) box 391 459 IPR009071 -
Pvu2g3054 471 Coils Coil 310 387 - -
Pvu2g3054 471 Coils Coil 441 468 - -
Pvu2g3054 471 MobiDBLite consensus disorder prediction 1 23 - -
Pvu2g3054 471 Coils Coil 90 117 - -
Pvu2g3054 471 Gene3D High mobility group box domain 130 247 IPR036910 -
Pvu2g3054 471 Gene3D High mobility group box domain 248 342 IPR036910 -
Pvu2g3054 471 MobiDBLite consensus disorder prediction 329 390 - -
Pvu2g3054 471 MobiDBLite consensus disorder prediction 329 400 - -
Pvu2g3054 471 CDD HMG-box 391 456 - -
Pvu2g3054 471 MobiDBLite consensus disorder prediction 122 151 - -
Pvu2g3054 471 SUPERFAMILY HMG-box 249 334 IPR036910 -
Pvu2g3054 471 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 262 328 IPR009071 -
Pvu2g3054 471 CDD HMGB-UBF_HMG-box 148 211 - -
Pvu2g3054 471 MobiDBLite consensus disorder prediction 130 147 - -
Pvu2g3054 471 MobiDBLite consensus disorder prediction 242 263 - -
Pvu2g3054 471 SUPERFAMILY HMG-box 133 209 IPR036910 -
Pvu2g3054 471 MobiDBLite consensus disorder prediction 1 60 - -
Pvu2g3054 471 CDD HMGB-UBF_HMG-box 262 325 - -
Pvu2g3054 471 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 468 IPR044601 GO:0003677
Pvu2g3054 471 SMART hmgende2 390 460 IPR009071 -
Pvu2g3054 471 SMART hmgende2 261 329 IPR009071 -
Pvu2g3054 471 SMART hmgende2 145 215 IPR009071 -
Pvu2g3054 471 Coils Coil 55 85 - -
Pvu2g3054 471 MobiDBLite consensus disorder prediction 242 265 - -
Pvu2g3054 471 SUPERFAMILY HMG-box 386 463 IPR036910 -
Pvu2g3054 471 Coils Coil 232 252 - -
Pvu2g3054 471 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 146 214 IPR009071 -
Pvu2g3054 471 Gene3D High mobility group box domain 385 471 IPR036910 -
Pvu2g3054 471 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 391 459 IPR009071 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pvu2g3054 HMG_box 4e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3054 K09273 - gmx:100783033 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3054 2 46003224 46005845 Pvu2g3054 2 46003224 46005845 ECH