Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3043 ATGGCTTCATCTACCATCAAGCAAACAGAACACCTCAACCGCACCAAACTCCTCGTCGAAGAAGACGCCCTTTTGAAGAGCCATCACCATCCCAAACTCGTGCGAATACGCGTCACCGACGCCGACGCCACGGACTCCTCCAGCGAGGACGAGGACCAGCCTTCCGTGTCCTCCACACGCCGCCGAGTCAAAAGCTTCGTCAACGAGATTACCATCCACGGCGCCGCCGGCGTTAAAGTTGTTTCCAGGAAAAGAAAGGTGAAGTCTGCCAACGCTCAGGCGCTCCGGCGGCGGACGGAGGCGAGGAAGTTCCGCGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATTAGGGACCCGTCGCGCCGCGTTCGGCTGTGGCTGGGCACCTACGACACTGCCGAGGAAGCCGCCATTGTGTACGACAACGCGGCCATTCAGCTGCGTGGCGCCGACGCGCTCACTAATTTCGTAACGCCTCCGGCGGAGGAGGGCATAAAAAGCGGTTACTGCTCCGGCGAGGAGGAGTTGCGCTCCCCCACTTCGGTTCTTCGGTGCTGTTGGGCGTCGGAGGAAGTTGAATCGGTAACAGCAAACGACGCGGTTGGTCCCGCGAGCGAGTGCGAACACTCGTGCTTTTCGGAGGATAGTAAGTCTAAAGATGAGACAGTGTTTGGTATTCCTGATGATGTGGCATTCGGTTTTGAGAGCACTTTGGGTATGTTTGACGAGTGCGCTAACAACGTTGCACAGAGCAGTGGTATATTCTTGGACGATGAATTTGATTTAAGTGGATGTTTTGTTAGTGAAAAAGAGAATTTAGATTTGGGTTTTGGTTTTGGGTCTACGAGTTGGCAAAGAGAGTGCGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA 930 0.5505 MASSTIKQTEHLNRTKLLVEEDALLKSHHHPKLVRIRVTDADATDSSSEDEDQPSVSSTRRRVKSFVNEITIHGAAGVKVVSRKRKVKSANAQALRRRTEARKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFVTPPAEEGIKSGYCSGEEELRSPTSVLRCCWASEEVESVTANDAVGPASECEHSCFSEDSKSKDETVFGIPDDVAFGFESTLGMFDECANNVAQSSGIFLDDEFDLSGCFVSEKENLDLGFGFGSTSWQRECDNFQDIGDLFVWDPLVAL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3043 309 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
Pvu2g3043 309 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Pvu2g3043 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 305 - -
Pvu2g3043 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 305 - -
Pvu2g3043 309 CDD AP2 103 159 IPR001471 GO:0003700|GO:0006355
Pvu2g3043 309 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Pvu2g3043 309 SUPERFAMILY DNA-binding domain 103 160 IPR016177 GO:0003677
Pvu2g3043 309 MobiDBLite consensus disorder prediction 36 60 - -
Pvu2g3043 309 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Pvu2g3043 309 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Pvu2g3043 309 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3043 Pvu-Chr2 45929067 45930538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3043 1 309 AP2-EREBP Transcription Factor Family AT4G23750 39.943 2.91e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu2g3043 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3043 - - gmx:100813992 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1673 2 30433762 30435007 Pvu2g3043 2 45929067 45930538 PCT