Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu2g3012 | ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACAACTCATGGATACGGCTGCTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAACTATTTGAGACCTGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAAAAGTTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACGGACAATGAAATAAAGAACTATTGGAACTCGTGGATAAAAAAGAAAATAAGAAAGAGTTCAGTGTCTTCAACCACTATTGCACAAAGTATCGATCAGAATTCTTCCCAGTTCAACTTCAATTCCAATCTGCTAGGCCACTTTTCTTCCAACCTAGATAATCTACAAACAAAACCACCACTTCAAGAAACCTTGTTTTCCTCAACATGCCCTTTGTTCATGTTTGACACACCTTCACTGGAAGGCCCAGCAACAGACTGCAACAGTGTACGAGCAGAACATTTTCAAGAGGCTGTGGGCTTGAGCACTGAAACATGGAACCTGAGCCACCATCAGGTTCAGGCACTTCCTCCTCTCACAGTGACTGTAGGCATGGACACCACAACTTATTTACCACCATTGATAGAGAACGTGGACAACATGGTCCCAATTGAGGTACAACCTTGTACCATGGAGGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCATGGCTTAAATGAATGGGTGGAAACGCAGCAGCAATGTCCTAACTTTCTCTTTTGGGACGGTGTTGAAGGACATATTGGTGGGGAAGAACTGGGACCGAATTCGGCAAATGCGGAAGCAAACACACTTTCTCCTTTTCCTTCTTCTTTGTGA | 942 | 0.4459 | MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSVSSTTIAQSIDQNSSQFNFNSNLLGHFSSNLDNLQTKPPLQETLFSSTCPLFMFDTPSLEGPATDCNSVRAEHFQEAVGLSTETWNLSHHQVQALPPLTVTVGMDTTTYLPPLIENVDNMVPIEVQPCTMEEQGDIALECLQRHGLNEWVETQQQCPNFLFWDGVEGHIGGEELGPNSANAEANTLSPFPSSL* | 314 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu2g3012 | 313 | CDD | SANT | 69 | 112 | IPR001005 | - | |
| Pvu2g3012 | 313 | CDD | SANT | 17 | 61 | IPR001005 | - | |
| Pvu2g3012 | 313 | Gene3D | - | 69 | 140 | - | - | |
| Pvu2g3012 | 313 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - | |
| Pvu2g3012 | 313 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 116 | IPR017930 | - | |
| Pvu2g3012 | 313 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
| Pvu2g3012 | 313 | PANTHER | MYB TRANSCRIPTION FACTOR | 1 | 312 | - | - | |
| Pvu2g3012 | 313 | Pfam | Myb-like DNA-binding domain | 67 | 111 | IPR001005 | - | |
| Pvu2g3012 | 313 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
| Pvu2g3012 | 313 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - | |
| Pvu2g3012 | 313 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
| Pvu2g3012 | 313 | Gene3D | - | 6 | 66 | - | - | |
| Pvu2g3012 | 313 | PANTHER | MYB DOMAIN PROTEIN 55 | 1 | 312 | - | - | |
| Pvu2g3012 | 313 | SMART | sant | 13 | 63 | IPR001005 | - | |
| Pvu2g3012 | 313 | SMART | sant | 66 | 114 | IPR001005 | - | |
| Pvu2g3012 | 313 | MobiDBLite | consensus disorder prediction | 298 | 313 | - | - | |
| Pvu2g3012 | 313 | MobiDBLite | consensus disorder prediction | 292 | 313 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu2g3012 | Pvu-Chr2 | 45587489 | 45590225 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu2g3012 | 1 | 297 | MYB Transcription Factor Family | AT1G63910 | 51.124 | 2.73e-99 | 295 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Pvu2g3012 | Myb_DNA-binding | 4.7e-15 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu2g3012 | K09422 | K02947 | gmx:100803556 | 487.648 |
Event-related genes