Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3006 ATGGCTCGGCAATTGTGTGAAGACAAATCCAAGGACATGGGTTCATCAACTGGGTTGTTCTACTCAGATGTGTCATCAAACAGCCCAACTCTCCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGACCCAGAGATGTTCAACCTCACCACTGGCATGGAGATGATAGGGTTTTCCAAGAACCTCCATCCACACAGTGAAAGCAACGGGGTCATGTGGAAAAGTTTCTTCGGCAAATCAAGTCAACACGCGGGTCCTTCCTCTTCCAAAACTATGAACGACTCTTCTTGCAATTTTTATAACCAGCATGAGTATAGTAATAAGCAAGACTTCACATCAGGGATTTCTGAAACAAGCAGCGAAAATTTAATAGTCGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGTTAATGCTTGATGATTCTTCCTTAAGGTGCGTGTTCCCTTGTGAAGGCAACGAAAGGCCTAGTCAAGGCCTTTCACTCTCGCTTAGTTCAACCAACCCTTCGAGTATTGGGTTGCAATCTTTTGAGCTACGACAAACAAACCATCATCAGCATCTTTCTGATTTTGTTTCAAGAGAGGGGTATTTTGGAAAATCAATCAATGCTCAACAGCAACAACAAATGTTGCAAGACGGGTATATGAGTCCTAACAAAGCTGCAAATATTTATCAGGGGCATTTTCTAATCAAGAACTCCAAGTTCTTGGTGCCTGCACAGCTCCTTCTGAACGAGTTTTGTAGTCTCGGAACAAAGGAAAATGATGTGCAAAAGCAGAAGCACTCTCAAAAGAACAAGTGGGAAGAGGGTAACAACGGTGGCGGTTCCTCAAAGAACCATTCTCTTAGCTCTCTAGAGTTCGTGGAACTGCAGAAGAGAAAGACAAGGCTGCTCTCGATGCTGGAAGAGGTTGATAGAAGATACAAACATTACTGTAACCAAATGAAGGGTGTGGTCTCCTCCTTTGAAGCAGTGGCGGGTAACGGGGCAGCCACAGTTTACTCGGCTTTGGCTTTGAGAGCCATGTCTAGACATTTTAGGTGTCTGAAAGATGGAATCATGGACCAAATTCAAGCCACCAGAAAAGCTATGGGAGAGAAGGATCCCGTTGCACCAGGCACAACAAGGGGCGAAACACCAAGGCTTAAAATAATTGACCGATCACTCAGACAACAAAGGGCCTTTCAACAAATTAGCATGATGGAAACTCATCCCTGGAGACCCCAACGTGGCCTTCCCGAACGATCCGTTTCAGTTCTTCGGGCTTGGCTTTTCGAGCACTTTCTTCATCCGTACCCAAGTGATGTCGATAAACACATCCTAGCCCGCCAAACTGGTCTCTCCAGAAGTCAGGTTTCGAATTGGTTTATTAACGCCAGGGTGAGGCTGTGGAAGCCCATGGTGGAGGAGATGTACTTGGAAGAAGAGAAGGAACACCAAAACGACGTAGCATCGTCGGAGGGAGGAGGCGCCAATCCCGAGGGGGATCAAAACGCGCCACGCGAGGATCAGAAGCCGACGCAGGCTCGGCTCCTCCGAATTGACTCGGAGAGCGTGTCGTCCATGGTCACCAGCACGGACCACAAAAACGACACGAAAAGCGGCAAAGGCCTCCAAAACGACAACCAATTGAACGACAGCAGCCATCCCGCGGAGGCGTTCGGGTCGGTGGAGCTTGACTTTTCGTCGTACGCGCAGCACTCCTCCGGCGTGGTTGGTGGGGGCGTGTCGTTGACGCTAGGGTTACAGCAGCAGGGTGAAAGTGTGGTGAGTTTAGCGTTCCCGCCAGCGACTCAGAGCTCGATGTTCTACGCACGGGACCAGATAGAAGAGTGTCAAACAGTTCAGTACTCTCTTTTGGACGGCGAAGGACAAAACATGCCGTATAGGAATCTCATGGGGACACAATTGCTCCATGATTTGGTATGA 1944 0.4871 MARQLCEDKSKDMGSSTGLFYSDVSSNSPTLQPHLMNHIQGFVTDPEMFNLTTGMEMIGFSKNLHPHSESNGVMWKSFFGKSSQHAGPSSSKTMNDSSCNFYNQHEYSNKQDFTSGISETSSENLIVGGAHDSAPWQENRLMLDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTNHHQHLSDFVSREGYFGKSINAQQQQQMLQDGYMSPNKAANIYQGHFLIKNSKFLVPAQLLLNEFCSLGTKENDVQKQKHSQKNKWEEGNNGGGSSKNHSLSSLEFVELQKRKTRLLSMLEEVDRRYKHYCNQMKGVVSSFEAVAGNGAATVYSALALRAMSRHFRCLKDGIMDQIQATRKAMGEKDPVAPGTTRGETPRLKIIDRSLRQQRAFQQISMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEHQNDVASSEGGGANPEGDQNAPREDQKPTQARLLRIDSESVSSMVTSTDHKNDTKSGKGLQNDNQLNDSSHPAEAFGSVELDFSSYAQHSSGVVGGGVSLTLGLQQQGESVVSLAFPPATQSSMFYARDQIEECQTVQYSLLDGEGQNMPYRNLMGTQLLHDLV* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3006 647 MobiDBLite consensus disorder prediction 516 533 - -
Pvu2g3006 647 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 604 - -
Pvu2g3006 647 MobiDBLite consensus disorder prediction 480 555 - -
Pvu2g3006 647 ProSiteProfiles 'Homeobox' domain profile. 408 471 IPR001356 GO:0003677
Pvu2g3006 647 MobiDBLite consensus disorder prediction 541 555 - -
Pvu2g3006 647 MobiDBLite consensus disorder prediction 259 285 - -
Pvu2g3006 647 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 604 - -
Pvu2g3006 647 CDD homeodomain 411 472 IPR001356 GO:0003677
Pvu2g3006 647 Pfam Homeobox KN domain 428 467 IPR008422 GO:0003677|GO:0006355
Pvu2g3006 647 Gene3D - 414 476 - -
Pvu2g3006 647 SUPERFAMILY Homeodomain-like 412 477 IPR009057 -
Pvu2g3006 647 Pfam Associated with HOX 235 358 IPR006563 -
Pvu2g3006 647 SMART HOX_1 411 475 IPR001356 GO:0003677
Pvu2g3006 647 SMART prehox3 229 360 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3006 Pvu-Chr2 45531875 45535947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3006 138 647 Homeobox Transcription Factor Family AT5G41410 48.668 9.00e-141 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu2g3006 POX 4.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3006 - - gmx:100792789 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1636 2 30093457 30098184 Pvu2g3006 2 45531875 45535947 PCT