Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3004 ATGGGTTTCCCAGTGGGCTACTCGGAGCTTCTCTTCCCGAAGCTTCTCTTCCAACTCCTCTCCCTCTTGGGCTTCCTCCGGAGGCTCATCAGCACCCTCCTCCGCTTCATGGGCCTCCACGATTTCCTCGAGCCCGACATTGCTTGGCCCGAAGCCCACACCCGAATGCCGGAATTCGAATCTGTCTCCGCCACGCTTATCCGGGAAATCCTCCCAGTAGTGAAGTTCCGCGACCTCCTTGACCCACCCGAAACCTGCGCCGTCTGTCTCACGGAGTTCGAGAAAAACGATGAGATCAGACGGCTAGCCAATTGTCGACACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGGTACGATCAGAGAACGTGCCCTCTTTGCAGAACACCCTTTATACCTGACGATATGCAAGGTACCTTCATTGAAAGACTCTGGGCTGCGTCTGGGATCTCTGAACATCCCCTTGTTCCTGCTTCCTAG 483 0.5528 MGFPVGYSELLFPKLLFQLLSLLGFLRRLISTLLRFMGLHDFLEPDIAWPEAHTRMPEFESVSATLIREILPVVKFRDLLDPPETCAVCLTEFEKNDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQGTFIERLWAASGISEHPLVPAS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3004 160 PANTHER BRH1 RING FINGER PROTEIN 1 154 - -
Pvu2g3004 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 154 - -
Pvu2g3004 160 SMART ring_2 86 128 IPR001841 -
Pvu2g3004 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Pvu2g3004 160 CDD RING-H2 86 129 - -
Pvu2g3004 160 SUPERFAMILY RING/U-box 67 135 - -
Pvu2g3004 160 Pfam Ring finger domain 85 129 IPR001841 -
Pvu2g3004 160 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3004 Pvu-Chr2 45494477 45494959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3004 1 160 C3H Transcription Factor Family AT1G63840 57.576 2.29e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3004 K16281 - gmx:100817079 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1634 2 30054720 30056036 Pvu2g3004 2 45494477 45494959 PCT