Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3002 ATGTCTTCTGATCTCTACTCTTATGAAACCACTTTCCACACACATTCAAACTCGGACTTTCTATCCTCTGATGGAGTTGGGGACCTTCCCTTTCTCTCCGACTCTTTTCCTTTCTTCCCCAATTCTCCCCCTAACGTAGCCCACCACAATTCCAACTCCAATTCTCTCCCTTCTCTCGACCCTTTTTCCCCTTCTTTTTTCTCTTTCTCCCCTCCAAGTTCCCACTTGGAAAGCCTCAGCCTTTACCATGCCAATCGCGTGCAGCCTCTGTCAAATGGAAAAAACTTGGCGAACCAGTTTGGAAGTTTCTCAGCTTTTGATGGGACTGAAGTGAAGACTGAGGAACGCCAATTGGGTATTGATTGTGTCTACGCTCAACAACTCCTTCCTCACAGTTACAGTGGTGCTGAAAATTTTTCCAAGTACATGCACAGAAGCTTCAGCAGCAACTCCTTTGAAGGAAAACCTGGTTTTCTGTCACAGCCTTACAGTGATACTCTTGTGGACTCTCCAAACTTTCAAAGGCATGACTTGAGTTCCCCAGAAGACACTCTCTTCACTGGACAAATGAGAAGGGTTTGCAGTACAGGAGATTTGCAGAACATGAAGGAAAATCGCATGTCTCCAACGGAGGCACCGTTGTTGGAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCGGAAGAGAGAAAAGAAAGAATCTCTAAATACAGAGCCAAGAGAAACCAGAGGAATTTCAACAAGACCATTAAGTATGCATGCCGAAAGACACTAGCAGATAATCGACCACGCATACGTGGCAGATTCGCTCGCAACGACGAAGCAGTCGACACTCCCAAGGCTTCATGTTCAGCACGAGACGAAGATGATGTTGATTTCTGGAAACTATATCAATTTGTCGGAAATCTAACGTCAAATAGATCAGAGACTTTCAGTATATAA 942 0.449 MSSDLYSYETTFHTHSNSDFLSSDGVGDLPFLSDSFPFFPNSPPNVAHHNSNSNSLPSLDPFSPSFFSFSPPSSHLESLSLYHANRVQPLSNGKNLANQFGSFSAFDGTEVKTEERQLGIDCVYAQQLLPHSYSGAENFSKYMHRSFSSNSFEGKPGFLSQPYSDTLVDSPNFQRHDLSSPEDTLFTGQMRRVCSTGDLQNMKENRMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRNQRNFNKTIKYACRKTLADNRPRIRGRFARNDEAVDTPKASCSARDEDDVDFWKLYQFVGNLTSNRSETFSI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3002 313 ProSiteProfiles CCT domain profile. 230 272 IPR010402 GO:0005515
Pvu2g3002 313 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 26 298 IPR045281 GO:0009909
Pvu2g3002 313 Pfam CCT motif 230 272 IPR010402 GO:0005515
Pvu2g3002 313 PANTHER CCT MOTIF FAMILY PROTEIN 26 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3002 Pvu-Chr2 45476237 45477814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3002 226 274 C2C2-CO-like Transcription Factor Family AT5G57660 53.061 1.36e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu2g3002 CCT 5.9e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3002 - - gmx:102665661 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1631 2 30039853 30041844 Pvu2g3002 2 45476237 45477814 PCT