Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu2g3000 | ATGGGCGGTTGCTGTTGCTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCCTACTATTATTATCCAAGAGCCTCAGAGGAGCATGTTCCTCTATCATCTCACCAGGGTGCCGCTTCTGCTTTCTCTGGGCGACTCTTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACTTTTGGTACCACTCAAACTCCACCTGTAACTCAAGAAATTCGTAGTGACAAGAATAATGCATCGTTTCATTCCACAAATTCTAGTACAATTCAAGAACAAGTATCTGGAGACAATCATGGGACCCCAGTTAAGATGGAAGAGCTGAAGGAATCAGAATGCAAAGTTCAGACTGATCTAGAGCTAGATTCTGCTAAGGATTCTGAAATTGAACTTGCTAAGTCAGGAAAACCTGTAGTTTTAGTAGAAGAGGAGGATACATGCCCAATTTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTTGCAACACAGTGTGACCATCATTTTCACCTTGCATGTATTCTGGAATGGATGGAAAGAAGTGAAACATGCCCTGTGTGCGATCAGGATTTGGTTTTCAACCCTCCCATTGAATAA | 639 | 0.421 | MGGCCCCCSSKETVLSAPPAYYYYPRASEEHVPLSSHQGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTFGTTQTPPVTQEIRSDKNNASFHSTNSSTIQEQVSGDNHGTPVKMEELKESECKVQTDLELDSAKDSEIELAKSGKPVVLVEEEDTCPICLEEYDAENPKLATQCDHHFHLACILEWMERSETCPVCDQDLVFNPPIE* | 213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu2g3000 | 212 | MobiDBLite | consensus disorder prediction | 93 | 112 | - | - | |
| Pvu2g3000 | 212 | SUPERFAMILY | RING/U-box | 154 | 208 | - | - | |
| Pvu2g3000 | 212 | MobiDBLite | consensus disorder prediction | 93 | 116 | - | - | |
| Pvu2g3000 | 212 | ProSiteProfiles | Zinc finger RING-type profile. | 161 | 202 | IPR001841 | - | |
| Pvu2g3000 | 212 | Pfam | Ring finger domain | 159 | 201 | IPR001841 | - | |
| Pvu2g3000 | 212 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 212 | - | - | |
| Pvu2g3000 | 212 | SMART | ring_2 | 161 | 201 | IPR001841 | - | |
| Pvu2g3000 | 212 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 207 | IPR013083 | - | |
| Pvu2g3000 | 212 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 1 | 212 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu2g3000 | Pvu-Chr2 | 45448066 | 45451164 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu2g3000 | 1 | 208 | C3H Transcription Factor Family | AT5G41350 | 54.028 | 1.02e-73 | 220 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu2g3000 | - | - | gmx:100816369 | 401.749 |