Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2999 ATGGAACAATGCTCAACATTCTCAAATGGGCCTTCTTTAGACCTCCTTGGAGTTCAAACAGTTGGTGAATTTTCTGGAAATGGTTGTTGTCTTGGAGAAGACCATGTTGATAACGGTGCTCACCATGGTAAACTGACTCAAAAAGGCCTGTTCTATGAACTTCTCCCTCTTTATCTGAAGGATAATTGTTCCCAAGTTGGTGCTCGGCCTTTGCTGGTTTTGGTCGATGGACAACAGCTCGATTTGTATAAACTGTTCTCCCTTGTGAAGGATAGAGGTGGATATGCTAAGGTTTCGAAAAATGGATTGTGGGGTTCTTTGACTAAGGAATTGGGTTTGAACCTTGAAGTTTATTCACCAGTGAAATTAGTGTACGCCAAGTATCTGAATGATTTTGAAAGGTGGCTCAAGAAAACTTTTGAAGAGAAGATTTTAAAAAATGGGAATCATGGGTGTGATTGGGGTTTGAAGTGGTTGCCAATGGATATAGAGAAAGAGTTCAGAGGCCTGTTATGTCTAAATTCAAAGAAAAAAGCTGATGATGAACTTTTCAAGTCAAAATCAAATAAAAAAAAGAAAAACACTGATTTGGCTAACCACAAGAATGGTAATAATCTATTGGACACCAAAGATCAAAATAATAAATCTGAGGATGTCCAACACATTGAAGGTGACAATAATGAAAAATCCTGTAATGGAATTAAGGACAATCCTGCAACCTTGGGTGCAGAATGTGCTGACAAGGAATATAACCCTCGCAAACGCAAACGGGATGCATTCTCCGGCATGATAAACTGGATGAAGGATATTGCAAAACATCCTCTTGTTCCTTTAACTCAACCGATACCAAAACCATCAAAGTGGAAGGAGTATAAAGGCCGGGACTTTTTTGGTCAATTTCTGAAGGCAAGACTGATTCTGTCACCGAGAACGCATGAAGAACCCAACAGTGGATTGTCTTCTTTGCAGAAGCAGAAGATGCATCCTGTCATTTACGAGGATCATGTTGCTCTTGGTCGCCAGGCTACAGGAAAATCGAGATGCAATGAGAGGCTGCCTTCCTCTGTTAAAGCTTGGTCATGCTCTTGCTGCAATCCATGTTCTCACAAAGGAAATACATTGGCAGGTTCACATGATAAGGTGGCAGAAAAATGTCCTCATGAGAAAACATCTGAAACCCTAGATGTATTGACTGAAAAAGCAATGGCTGAATCATCTGGGGACGAGTTTCTTGGAAAGCAAGTATCTGTAGGCCCTCGTTTTCAAGCTGAAATCCCTGAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGCTGGGCACACAAGTATGGTCTTTGAAACAGGGCACAGAACCTGCTACTGAAACAGATATTGGAAGGGGAAGACAAGAGAAGTGTAGCTGCGAACATCAAGGTTCTGTTACGTGTGTTAGATTACATATCGCTGAAAATAGGGTGAAATTGAAGCTTGAATTGGGTTCTACATTTTACCATTGGGGATTTGATCGAATGGGTGAGGAAGTTTCACTTCAATGGACAACTACAGAAGAAAAGAGATTTAAGGATATCATGAGGTCAAATGCTCCCTCTAAAATTAAATACTTTTGGAACAATGGATTCAAATACTTTGCAAACAAGACAAGAAGACACTTGGTGAGCTATTACTTCAATGTGTTCCTCATTCAACTAAGAACCTATCAGAATCGAGCGACCCCAAAGAATATTGATAGCGATGATGAAGTAGAGTTTGGATATTTGAGCAAAGGTTTTGGGATGGAAACCATCGAGGGTCCTGATGATGATTTCCTGGAGTGTTCTAAGAACGAGCAGTACATTAATTTTGATTAG 1851 0.403 MEQCSTFSNGPSLDLLGVQTVGEFSGNGCCLGEDHVDNGAHHGKLTQKGLFYELLPLYLKDNCSQVGARPLLVLVDGQQLDLYKLFSLVKDRGGYAKVSKNGLWGSLTKELGLNLEVYSPVKLVYAKYLNDFERWLKKTFEEKILKNGNHGCDWGLKWLPMDIEKEFRGLLCLNSKKKADDELFKSKSNKKKKNTDLANHKNGNNLLDTKDQNNKSEDVQHIEGDNNEKSCNGIKDNPATLGAECADKEYNPRKRKRDAFSGMINWMKDIAKHPLVPLTQPIPKPSKWKEYKGRDFFGQFLKARLILSPRTHEEPNSGLSSLQKQKMHPVIYEDHVALGRQATGKSRCNERLPSSVKAWSCSCCNPCSHKGNTLAGSHDKVAEKCPHEKTSETLDVLTEKAMAESSGDEFLGKQVSVGPRFQAEIPEWTGVVSESDSKWLGTQVWSLKQGTEPATETDIGRGRQEKCSCEHQGSVTCVRLHIAENRVKLKLELGSTFYHWGFDRMGEEVSLQWTTTEEKRFKDIMRSNAPSKIKYFWNNGFKYFANKTRRHLVSYYFNVFLIQLRTYQNRATPKNIDSDDEVEFGYLSKGFGMETIEGPDDDFLECSKNEQYINFD* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2999 616 Pfam ARID/BRIGHT DNA binding domain 50 133 IPR001606 GO:0003677
Pvu2g2999 616 ProSiteProfiles ELM2 domain profile. 413 459 IPR000949 -
Pvu2g2999 616 ProSiteProfiles ARID domain profile. 45 137 IPR001606 GO:0003677
Pvu2g2999 616 MobiDBLite consensus disorder prediction 184 236 - -
Pvu2g2999 616 SMART bright_3 46 138 IPR001606 GO:0003677
Pvu2g2999 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 615 - -
Pvu2g2999 616 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 615 - -
Pvu2g2999 616 MobiDBLite consensus disorder prediction 211 230 - -
Pvu2g2999 616 SMART ARID_2 42 133 - -
Pvu2g2999 616 MobiDBLite consensus disorder prediction 184 198 - -
Pvu2g2999 616 SUPERFAMILY ARID-like 45 138 IPR036431 GO:0003677
Pvu2g2999 616 Gene3D - 32 148 IPR036431 GO:0003677
Pvu2g2999 616 CDD ARID 51 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2999 Pvu-Chr2 45436280 45442364 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pvu2g2999 ARID 2.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2999 - - gmx:100819320 988.793