Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2985 ATGGTGCCAGAGAACATGAAAAAACAACTTGCTTTGGCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCCGGGGTGTTGAGATGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCTTCAAAACTACAGAAATCAGCCCACAAAGCAAACGGCCTTCGGCAGCAGCACTCTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGTATGTCCTTCATATTCAACCTTGGCCAAGGGCTACCAGGAAGAACTCTGGCAAAGGGTCAATCCATTTGGCTGAACAATGCCCATTCGGCTGATTGTAAAGTTTTTAGTCGTTCTCTTCTGGCAAAGAGTGCATCCATTGAGACGGTCGTGTGTTTTCCGGTTATGGAAGGAGTTATTGAGCTAGGTACCACTGAACATGTCTCAGAAGATTTGAGTCTCATTGAGCGGATCAAGACTTCTTTCTTGAATAATTTGCATGTCAATGTTCCTAATAAGTCAGGAACCACATTGAAATCAAGAAACCAGGAAGATCTTGCATATGTAGCATTCGATAATAATGTTGAATCAATTCCAGAAATTGAATATGACATAGCCAACAGAACCTCTCCAGATGGTAGTTCAAATGCATTCCAATCTAATCAACCACTAGATGAAACATTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAATTATGGATGATGAGCTGAGTAACTGTGCTCATAACTCCATGAATTCCAGCGACTGTATATCACAAACTTTTGCCAGCCCTGAGAATATTCCTTCTGCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCGAGATATTCAAAAGTGCAACAACCCAAAAATGACGCTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTGTCTGACCTTTTAAAAAACTCTGATCAGTTACTCATGAGAATGCATTCACAAAAGTTCCATCAGGAATCAAGCTTTGTTTGTTGGAGGGCAGAAGGAGCAATGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTGCTGTTTGAAGTTCCTCAAATGCACTTGGATGGTCTGCATGAGTCTCAAGAAGAGAACGACTATAAAGAGGGAATGAGACTAGAGACTGATGAGATTGGCATGAACCACGTCATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGCTCAAAGAGGGGTAACATATATAGAGCCCGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGGACTTCTGATCATTATTTTAGCAAAAACCACAATGGCAAGAAATCAGTTGTAAAAAGGAGAAAGGTTTGCGGTGTAGTTGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGCAGTTATGCTAATGATGTTACTGTGAGTACTAGTGACAATGAAATTGTGATTGAAATGAAGTGCCCCTCCAGAGAAGGAAGACTAATAGAAATTATGGAAGCAGTGAATAGTTTCAATATAGATTTTAATTCAGTTCAGTCAACAGAGGCTAATGGAAATCTTTATCTGACCATTAAATCTGTGTTCACAGGAGCAACTGTTGCAACAACCAAAAGAATCAAACAAGCACTCCAAAAAGTGGCTTCGAAGTTCTGA 1884 0.4092 MVPENMKKQLALAVRSIQWSYAILWTDSTTQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSFKTTEISPQSKRPSAAALSPEDLTDAEWYYLVCMSFIFNLGQGLPGRTLAKGQSIWLNNAHSADCKVFSRSLLAKSASIETVVCFPVMEGVIELGTTEHVSEDLSLIERIKTSFLNNLHVNVPNKSGTTLKSRNQEDLAYVAFDNNVESIPEIEYDIANRTSPDGSSNAFQSNQPLDETFMVERITSGTSQVQSWQIMDDELSNCAHNSMNSSDCISQTFASPENIPSAPKCNNPSDPFARDIQKCNNPKMTLVDPRSDDWHYQRVLSDLLKNSDQLLMRMHSQKFHQESSFVCWRAEGAMDCQWPRSGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEAQRGVTYIEPGTRRSPQDMVERTSDHYFSKNHNGKKSVVKRRKVCGVVETGKEINSDALKGSYANDVTVSTSDNEIVIEMKCPSREGRLIEIMEAVNSFNIDFNSVQSTEANGNLYLTIKSVFTGATVATTKRIKQALQKVASKF* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2985 627 PANTHER TRANSCRIPTION FACTOR TT8 3 623 - -
Pvu2g2985 627 PANTHER TRANSCRIPTION FACTOR EGL1 3 623 - -
Pvu2g2985 627 Coils Coil 464 491 - -
Pvu2g2985 627 Gene3D - 423 486 IPR036638 GO:0046983
Pvu2g2985 627 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 425 474 IPR011598 GO:0046983
Pvu2g2985 627 Pfam Helix-loop-helix DNA-binding domain 429 475 IPR011598 GO:0046983
Pvu2g2985 627 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 190 IPR025610 -
Pvu2g2985 627 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 427 492 IPR036638 GO:0046983
Pvu2g2985 627 SMART finulus 431 480 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2985 Pvu-Chr2 45309544 45313699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2985 2 624 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.037 2.88e-178 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g2985 bHLH-MYC_N 5.4e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2985 - - gmx:100808167 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2985 2 45309544 45313699 Pvu2g2985 2 45309544 45313699 ECH