Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2959 ATGTGGGCTTGGATTCTTGGTGAAGGGCGTAGGGCGGGGTGCGAGGTGGCGTGCACCTACAATTGGGTGGCGCTCCGGCACATGGGTGGTGGTCCAAGAACCTTTCCGGGGGGCGTGAGCAAGTGGAAGTGGAAGCGAATGCACGAGAAACTCGCAAGTGACAAACAGAAAAGACTTATCGAACAAGAAAAGCAGCTCTACGAGGCTCGCATTCGCTCCCACATCCGTTCCACCCTCTCCCCTGACCACCGCTCCGCCGCCGCCGCCACACACCGTCCTTTCTCCCCTAAAGACCACGTCAAAGCCCTCGCCGACCGCTTCGTCAGAGAAGGCGCCCAAGATCTCTGGAACGCGAGCGACGGTCCCCTGACTTCGAACCCGACACCGAACCAGACACCGAACCCGACACCGAACCTGACACCGACCCCAAACCTTAATTTTCTCCCCAAACATTCTAGGGCCTACCGTTCGGTTCCCGAGGTTAGCAACAACCGTGTCGGGGCCCCCAAGTATAGGTTTTGGCGGAAGGGTAGTGATGATTCTTCTTCCGGTGATAGCGAGAGTGAGAATGAGAGTGAATTGAGTTTGAAGACGGGTAGTAGTGCTTCTTTGAGGGAGTATGATGTGAAGAGAGAGAAGAGGGTTGTGCCTAAGACATCTCAAGAGGTTGAGTTTATTAGGCATGAGCTTAATAAGCGGAAGTTGAGACAGAATGAGGAGCAAGAGAGTGAGAAACAACACAGCAATGAAAGCATTCTAAGCAACACAAGATTTGATGAGTGCGGTCTATCACCGCAAACTGTCAAGGCACTTTCTTCTGCTGGTTATGTTCATATGACACGGGTACAAGAGGCTAGCCTCTCGATTTGCCTTGAGGGTCTGGATGCTTTAGTGAAATCTAAAACTGGCACCGGAAAAAGTGTAGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAATACATCTCAACGGGTCCCCCCAATATATGTTCTTATTCTCTGCCCTACAAGGGAACTTGCTAGTCAAATTGCTGCTGTAGCAAAAGTTTTGCTGAAATATCAAGATGGCATTGGGGTGCAGACTCTTGTTGGAGGCATACGATTTAAAGTTGACCAAAAACGTCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAGAATAAGTCTGGAATATCTCTTCGACTAATGGGCTTGCAGATGCTTGTTCTTGACGAAGCTGATCATTTACTGGACCTGGGATTTAGAAAGGATGTAGAAAAAATTGTGGACTGTTTGCCCCGTCAAAGGCAATCATTACTCTTTTCTGCAACCATACCAAAGGAGGTACGTCGTATATCCCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGTTGCGTGGAAACTCCTGTTAAGGTGAAGCAATCTTATCTCATTGCTCCTCACGAGTCACATTTTCAATTAGTGCATCATATTCTGAGGGAGCATATCTTGCAAACACCTAATTATAAGGTTATTGTATTCTGTATAACTGGAATGGTGACCTCACTCATGTATAACCTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATGCATTCACGAAAACCTCAGCTCTATCGTACTCGTATATCAGATGAGTTCAGGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGGGGAATGAATTATCCTGATGTCACCTTAGTCGTACAGGTGGGAATTCCTTCTGACCGTGAACAATACATACACCGCCTTGGAAGAACAGGTCGGGAAGACAAAGAAGGGGAAGGCCTATTGTTGATTGCTCCATGGGAAGAGTATTTTTTAGATGAAATTAAGGATCTACCTCTACAGGAATTCCCCTTACCTAACATAAATCCACACACAAAACTTAAGATTGAGAATTCGATGGCAAAGGTTGATAATGACATCAAAGAAGCTGCTTATCATGCTTGGCTTGGCTATTATAACTCTATCAGGGAAATTGGGAGGGAAAAGACCACTGTAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCTATAAAAATGGGTTTGAAAGACATTCCTGGAATTAGAATTCGGAAATAG 2178 0.4578 MWAWILGEGRRAGCEVACTYNWVALRHMGGGPRTFPGGVSKWKWKRMHEKLASDKQKRLIEQEKQLYEARIRSHIRSTLSPDHRSAAAATHRPFSPKDHVKALADRFVREGAQDLWNASDGPLTSNPTPNQTPNPTPNLTPTPNLNFLPKHSRAYRSVPEVSNNRVGAPKYRFWRKGSDDSSSGDSESENESELSLKTGSSASLREYDVKREKRVVPKTSQEVEFIRHELNKRKLRQNEEQESEKQHSNESILSNTRFDECGLSPQTVKALSSAGYVHMTRVQEASLSICLEGLDALVKSKTGTGKSVAFLLPAIETVLKAMSSNTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYQDGIGVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLQMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVRRISQLVLKREHKYVDTVGMGCVETPVKVKQSYLIAPHESHFQLVHHILREHILQTPNYKVIVFCITGMVTSLMYNLLREMKMNVREMHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVVQVGIPSDREQYIHRLGRTGREDKEGEGLLLIAPWEEYFLDEIKDLPLQEFPLPNINPHTKLKIENSMAKVDNDIKEAAYHAWLGYYNSIREIGREKTTVAELANRFSESIGLQRPPALFRKTAIKMGLKDIPGIRIRK* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2959 725 MobiDBLite consensus disorder prediction 116 149 - -
Pvu2g2959 725 Pfam DEAD/DEAH box helicase 280 458 IPR011545 GO:0003676|GO:0005524
Pvu2g2959 725 CDD SF2_C_DEAD 485 618 - -
Pvu2g2959 725 MobiDBLite consensus disorder prediction 128 142 - -
Pvu2g2959 725 Gene3D - 220 471 IPR027417 -
Pvu2g2959 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 626 IPR027417 -
Pvu2g2959 725 Gene3D - 480 705 IPR027417 -
Pvu2g2959 725 SMART helicmild6 528 609 IPR001650 -
Pvu2g2959 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 654 IPR001650 -
Pvu2g2959 725 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 256 284 IPR014014 GO:0003724
Pvu2g2959 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 470 IPR014001 -
Pvu2g2959 725 PANTHER RNA HELICASE 226 724 - -
Pvu2g2959 725 PANTHER RNA HELICASE 31 108 - -
Pvu2g2959 725 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 31 108 - -
Pvu2g2959 725 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 226 724 - -
Pvu2g2959 725 Pfam Helicase conserved C-terminal domain 503 607 IPR001650 -
Pvu2g2959 725 MobiDBLite consensus disorder prediction 173 199 - -
Pvu2g2959 725 SMART ultradead3 275 486 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2959 Pvu-Chr2 45094131 45099158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2959 256 634 Eukaryotic Initiation Factors Gene Family AT3G19760 26.010 1.67e-39 149