Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2945 ATGGACTGGAATCTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTTTAGAAGTAAGGGGGAATTTTCAGTTGACTTGAAGCTTGGGCAGGTGGGGAATTCTGGCATGGAATCAGTGTTGACCAAGAACAAAGATGCTGTAGGAGTCTCCAAGATCACATCCTCATCTTCTGGGTCATCTAAGAGAGCTCGTGCCCTTGGCAACGGGACACAAACAGTGTCATGCCTTGTAGATGGGTGCAACTCTGACCTCAGTAACTGCAGGGACTATCACAGGCGCCACAAGGTCTGCGAAGTCCATTCCAAAACTGCACAGGTCACAATTGGGGGCCAGAAACAAAGGTTCTGCCAGCAGTGCAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAACCTCTTACGCGGTCTGGTAGTTTTTTGTCGAATTACCAAGGTACCCAGTTGCTACCTTTCTCAAGTTCACATGTATACCCATCCACTACTGTGATGAATCCAACATGGGGTGGAATTGTTGCTTCTGGTGATGGTAGGCTTCATGGGCACAACCAACAGCACCACAACCAGGGTGAGCTTTTTCTTGGATCTTCTCCAACCGGTTATAAAGAAGGGAAGCAATTGGCCTTCATGCAAGCTGACCACACCCTCAACAACCAAAGCCCACATCTCCCAGGTGGGTCCGTGGGCCAGGCCCAGATGTTTCTGAGGGCCGGCCCGTATTCCGAAAGCGGTGGGCTTAGGTGCAAAATGTTGTGCGATAACCTTACAGGCTCGGTCCACGACTCCTCTCGTGCTCTCTCTCTTCTGTCATCACCACAGCCGCACAGTCCTGGAAATGGGTTGAGCCCAATGGTGAACCCGCATTCGATGCAGCCATTGGGCCTGAGCCTGCATGATCATAACAGCTTGGAGGCCGTGGATCCGGTTTTGGGCCTGAATGGGAGTGACCACCATTCTTCGTCGATGTATAACATAGTTCTAATGGATCCCAGGGGAACGAAGCCCCCTCCACTGTTTCCCTTTCAATGGGAATAG 1152 0.5087 MDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMFRSKGEFSVDLKLGQVGNSGMESVLTKNKDAVGVSKITSSSSGSSKRARALGNGTQTVSCLVDGCNSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPSTTVMNPTWGGIVASGDGRLHGHNQQHHNQGELFLGSSPTGYKEGKQLAFMQADHTLNNQSPHLPGGSVGQAQMFLRAGPYSESGGLRCKMLCDNLTGSVHDSSRALSLLSSPQPHSPGNGLSPMVNPHSMQPLGLSLHDHNSLEAVDPVLGLNGSDHHSSSMYNIVLMDPRGTKPPPLFPFQWE* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2945 383 MobiDBLite consensus disorder prediction 306 325 - -
Pvu2g2945 383 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 383 - -
Pvu2g2945 383 SUPERFAMILY SBT domain 92 173 IPR036893 GO:0003677|GO:0005634
Pvu2g2945 383 MobiDBLite consensus disorder prediction 157 179 - -
Pvu2g2945 383 Pfam SBP domain 94 167 IPR004333 GO:0003677
Pvu2g2945 383 ProSiteProfiles Zinc finger SBP-type profile. 91 168 IPR004333 GO:0003677
Pvu2g2945 383 MobiDBLite consensus disorder prediction 306 332 - -
Pvu2g2945 383 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 383 IPR044817 GO:0003677
Pvu2g2945 383 Gene3D - 85 155 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2945 Pvu-Chr2 44988045 44991726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2945 1 383 SBP-box Gene Family AT5G50670 43.750 3.78e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu2g2945 SBP 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2945 - - gmx:100806507 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2945 2 44988045 44991726 Pvu2g2945 2 44988045 44991726 ECH
Pvu2g2945 2 44988045 44991726 Pvu9g1704 9 24130481 24134675 PCT