Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2913 ATGGCAGCTTTTTCATCCCAATACTACCATCCCTTTCTAGTTCACTCCCCAACCTTCTCAATCACTCCTTCCATAAACAAACTCTCTTCTTTGGGGGACCAACAACCCCTTATAAACACCACCACTACCCTTCCTCCTTCTCATCATTTTCACAATACTCTTCATCAGGAAACGTCTCTCAATAGTGTCACTAATCAACAATCTAGCTCCGCTGATCAAACCTCCAAGGCTACTACCATCAGTGACACTGACCCTTCTGTGATAAAAAACCATAGTCCTCAGACATCCATGGTTGTGGACAAGCTCGAAAAAGGTGATGAACAGGTCACTCAAAAGGTGACCCCGGTGCAGAAGAAGAGAAGAGCAAGAAATGAACCTTCCTTGAGCAGCAGCCCCTTATCAATGGACTCAGCAGAAGAGGCAAAGAAGAAACAAAAGAATAGCAATGGTGGGGATCAAGGAGAAGACAAGCCAAAAGAAGTGAAGAAGGATCAGAAAAAAGGTCCAGAAGATCCTCCAACAGGGTATATTCACGTTAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTAGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCTTCTGTGAATCCCATGTTCTTTGACTTGGCAATGGACTTAGACACCCTCATGAAATTAAATAATGCAGCATCCCCATCACTACTACCATGTGTGGAACAATGCAGACCAAACCAGGCACTTGCTTTTGCTGACACAACCACCCTGACCACCACTACTAGCAGCTTCCCCACCGCTAATAATGATGACTATCTTTTGGATTATTCATCCTCATCTTTTCTTCAACCCCACAGGCCAAATGCCTTCTTTGAGTATAACGGTGGTCAGATTTGGGAAGTAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCGCCGATAACACTGGCTCTTTCAATTAA 1080 0.4407 MAAFSSQYYHPFLVHSPTFSITPSINKLSSLGDQQPLINTTTTLPPSHHFHNTLHQETSLNSVTNQQSSSADQTSKATTISDTDPSVIKNHSPQTSMVVDKLEKGDEQVTQKVTPVQKKRRARNEPSLSSSPLSMDSAEEAKKKQKNSNGGDQGEDKPKEVKKDQKKGPEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDLAMDLDTLMKLNNAASPSLLPCVEQCRPNQALAFADTTTLTTTTSSFPTANNDDYLLDYSSSSFLQPHRPNAFFEYNGGQIWEVDQRQKFLHPYGFADNTGSFN* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2913 359 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 359 - -
Pvu2g2913 359 MobiDBLite consensus disorder prediction 61 97 - -
Pvu2g2913 359 MobiDBLite consensus disorder prediction 61 193 - -
Pvu2g2913 359 MobiDBLite consensus disorder prediction 137 193 - -
Pvu2g2913 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 235 IPR011598 GO:0046983
Pvu2g2913 359 CDD bHLH_AtBPE_like 175 251 - -
Pvu2g2913 359 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Pvu2g2913 359 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 359 IPR024097 GO:0006355
Pvu2g2913 359 Gene3D - 182 253 IPR036638 GO:0046983
Pvu2g2913 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 252 IPR036638 GO:0046983
Pvu2g2913 359 SMART finulus 191 241 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2913 Pvu-Chr2 44670929 44673772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2913 128 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 60.811 8.02e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g2913 HLH 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2913 - - pvu:PHAVU_002G283100g 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2913 2 44670929 44673772 Pvu2g2913 2 44670929 44673772 ECH