Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2905 ATGATGTCTGGTTGGATGCAAGACACAGAAGAACAAAACTCTGCTTCGTGGTCAAGCCCAAACGCCAACGAACTAAGCTTCTTCTCACTGTGTGCCTACAAACCCATTCCTGAGATCCATGAAGAATGGCACGTGCCCAACAACATGGCCTTCTCCACCAACTTTGCTGATAACATGTTACTACAACAACACCAACCATTGCACACTTTCTCTTCTTCCACCAACCTTGACCTATCTCAAGGGCTCAACTCCCTCACTCCCAAACCCTCCTTTTACCCGTTGGAGCATGGCTTTCGCGCGGCTTCCGATGTGGGACTTCTTGACCCTCAACCTTTGAACAAGGTTCATCATGGCGGTGTCTTATTCACCTCAAATGGCAATAACCAGTTAGCCCTTCCAAATTTAGCAACCATGTGTGCAATGCCTCCCCTACAAGATGGTCTTGGATTTTCGGGATTCAAGAATATTGGTGACTCTGATCATGCGGAGGGTTCAAGAAAGGCCTTACTGAGACCCCTTGAATCGTTCCCTCCATCAGGTGCACAACCAACACTTTTTCAGAAGCGAGCAGCACTAAGGAAAAGCTTGGAACATAACCTCAAAGGCAAGAGTAAAGGGAATAGTGATAGTAACAAGAGGAAGACGTGTAATAATGGAGAAGGTGTTGAATGGTCGGGGTTGAATTATGATTCTGACGAGAGTGATGAGAATAAGACGATGGAAGAGAGTGGAAGGTACGGTGGAAACAGCTCGAATGCGAATAGTACCACCGTCAATGGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGGATACCTGCGAAGAATTTGATGGCTGAACGCCGCCGAAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGATCCATTGTTCCCAATATTAGCAAAATGGATAGGGCTTCAATACTTGGGGATGCAGTAGAGTATTTGAAGGAACTTCTGCAAAGGATCGGTGACCTTCACAATGAATTGGAGTCAACACCACATGCTGGCTCTTCATTGACTTCAAGCTTTCTTCATCCTTTGACACCCAATTTACCAACAC 1066 0.4615 MMSGWMQDTEEQNSASWSSPNANELSFFSLCAYKPIPEIHEEWHVPNNMAFSTNFADNMLLQQHQPLHTFSSSTNLDLSQGLNSLTPKPSFYPLEHGFRAASDVGLLDPQPLNKVHHGGVLFTSNGNNQLALPNLATMCAMPPLQDGLGFSGFKNIGDSDHAEGSRKALLRPLESFPPSGAQPTLFQKRAALRKSLEHNLKGKSKGNSDSNKRKTCNNGEGVEWSGLNYDSDESDENKTMEESGRYGGNSSNANSTTVNGGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSIVPNISKMDRASILGDAVEYLKELLQRIGDLHNELESTPHAGSSLTSSFLHPLTPNLPT 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2905 355 SMART finulus 277 326 IPR011598 GO:0046983
Pvu2g2905 355 MobiDBLite consensus disorder prediction 1 20 - -
Pvu2g2905 355 Gene3D - 263 336 IPR036638 GO:0046983
Pvu2g2905 355 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 58 353 - -
Pvu2g2905 355 Pfam Helix-loop-helix DNA-binding domain 278 320 IPR011598 GO:0046983
Pvu2g2905 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Pvu2g2905 355 CDD bHLH_AtAMS_like 274 345 - -
Pvu2g2905 355 MobiDBLite consensus disorder prediction 335 355 - -
Pvu2g2905 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 341 IPR036638 GO:0046983
Pvu2g2905 355 MobiDBLite consensus disorder prediction 197 269 - -
Pvu2g2905 355 PANTHER BHLH TRANSCRIPTIONAL FACTOR 58 353 - -
Pvu2g2905 355 MobiDBLite consensus disorder prediction 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2905 Pvu-Chr2 44611061 44612679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2905 164 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 56.477 3.15e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu2g2905 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2905 - - pvu:PHAVU_002G2823000 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2905 2 44611061 44612679 Pvu9g1673 9 23563688 23566524 PCT