Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2902 GTAGAGTACATTTTCAATCGTCGGTTACAACCCATTGTCAGTGTTGACATCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAATCCTCCCTTGTATACGATCAGGCGCGTGAAAAATTTATGTCACTGAGAAAAAGTACTAAGATTGACATTGCCACTGTCATTAAAGAGGAACTGCAGGAAGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATTTGGTTGCCACTCTTAATAACGTTGAGGTGAAGAAGAGATTCGAGTTTTTAGAGGCTGTAACCAGAATTATGGATGCTCATTTTCGATACTTTCAACAGGGGTATCAGCTATTGAATCAGATGGAACCTTTCATTAATGAGATTATGGATTATGTACATCAGTCAAGAGAAAATTACAATAGCGAGCAGATTCAACTTTATCAAAGGATGCAAGACTACAAGAAACAAGCTTATGAAGAAAGTAGGTTTTCCTTGAGTGGTCCTTACGGTTCTCCTCGTGTAGACTTTGCACATCCATTTTCTAGGATATCAAATGAGGTGGCAGATATAGTAATGGAATCTGCTGCAAATGGAAAGGTTCAAATCATTCGGCAAGGACATCTTTCAAAACGATCCTCCAATTTGAGAGCTGATTGGAAAAGAAGGTATTTTGTTCTCGACAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGAGCGGGTCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCACTGAAAATGGTTCTGGAATTCTAAGTCGTTGGCTTTCTTCTCATTACCATGGAGGTGTCTATGATGAAAGATCTATTGCACGTCATACAGTGAACCTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTGAGATTCTGCTTCAGGATTATTTCGCCATCAAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGCAAAAGATAAATGGAGTAATTGCCAGCTTGTTGAATGTCCAGACAATGGAAACGCCTCTCTCAGCTGACTCAGAAAACGACAACTCTCGCTCTGATGACAATATTGATAAGTTAGGAAGTTATCCAGATGATGATCATGCTTTGAGAGTGAAGTCTCCATTCAATAATGCCACGCGTAATAACCACTTAAGTTTGTCTAAAAGTATGTACGTACATACACACAGTATGAGAATTCAAAAGCCAATTGATGTTCTTAGAAGTGTGAGCGGAAATGATAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAGTGCTCTGGTGTTCATCGTAATCTTGGTGTACATGTATCAAAAGTGAGATCGCTGACACTTGATGTTAAAGTTTGGGATTCCTCTGTCTTAAGTATGCTTAAATCTCTTGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGTTGTTGCATTCAGGGGGTAATTTGCAAACTGATGACACCCTTGCTAGTTCATCCAAGGAAAAGGGAGAGGAGTTATTCCATGCAACAAAGCCAAAACATGACGATCCTATTTTGTTAAAGGAAAGGTTCATTAACGCAAAGTACTGTGAGAAAATATTTATTCAGCGGATCACAAGCCACCCTATCCATTCACTAGAGCAACAGGTGCAGGAAAGCATCTGTGCAAATGACAAGAAAGCAGTGTACCAGCTTATTCTTAAGTCGGATGTTGACCTCAATGCCATCCGTTGGCAATCATTGTCTGGTGACTCTTTCAACATGGCATCTGAAAGTGAAAGTGCAGGTGAGTCTTTGAACATGGCATCTGAAAGTGAAAATGAGGTCGTTGAGGACGTGAAAGATGGCTCTAGCGTGCTTCACTTGGCTTGTCTAACTGGTGACATTGGCATGGTGGAGCTACTCCTACAGCTTGGGGCAGATATAAATGCTTCTGATTCTAGAGGTCGGACACCACTTCATTGTTGTATTCTTAGAGGACAGACTGCAGCTGCAAAATCGCTTATCTTGAGGGGAGCCAATATATATATCGCAGATAAAGAAGGCAACACTCCTGTGAAGCTTGCATCAGAATCCGACTGTTTTGACACTGAAATTATAAAACTCTTGACAAGCAGATAA 2133 0.4102 VEYIFNRRLQPIVSVDIHEVKEARKRFDKSSLVYDQAREKFMSLRKSTKIDIATVIKEELQEARASFEEARFNLVATLNNVEVKKRFEFLEAVTRIMDAHFRYFQQGYQLLNQMEPFINEIMDYVHQSRENYNSEQIQLYQRMQDYKKQAYEESRFSLSGPYGSPRVDFAHPFSRISNEVADIVMESAANGKVQIIRQGHLSKRSSNLRADWKRRYFVLDSRGMLYYYRKPWSGSYGSNQPSPKRNSGTENGSGILSRWLSSHYHGGVYDERSIARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMQKINGVIASLLNVQTMETPLSADSENDNSRSDDNIDKLGSYPDDDHALRVKSPFNNATRNNHLSLSKSMYVHTHSMRIQKPIDVLRSVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHVSKVRSLTLDVKVWDSSVLSMLKSLGNLFANSVWEELLHSGGNLQTDDTLASSSKEKGEELFHATKPKHDDPILLKERFINAKYCEKIFIQRITSHPIHSLEQQVQESICANDKKAVYQLILKSDVDLNAIRWQSLSGDSFNMASESESAGESLNMASESENEVVEDVKDGSSVLHLACLTGDIGMVELLLQLGADINASDSRGRTPLHCCILRGQTAAAKSLILRGANIYIADKEGNTPVKLASESDCFDTEIIKLLTSR* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2902 710 Pfam Ankyrin repeats (many copies) 621 672 IPR002110 GO:0005515
Pvu2g2902 710 ProSiteProfiles PH domain profile. 194 330 IPR001849 -
Pvu2g2902 710 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 710 - -
Pvu2g2902 710 SUPERFAMILY BAR/IMD domain-like 4 217 IPR027267 -
Pvu2g2902 710 SUPERFAMILY ArfGap/RecO-like zinc finger 400 540 IPR037278 -
Pvu2g2902 710 CDD ArfGap 404 533 - -
Pvu2g2902 710 ProSiteProfiles Ankyrin repeat profile. 619 651 IPR002110 GO:0005515
Pvu2g2902 710 SUPERFAMILY Ankyrin repeat 561 709 IPR036770 -
Pvu2g2902 710 SMART ANK_2a 652 681 IPR002110 GO:0005515
Pvu2g2902 710 SMART ANK_2a 619 648 IPR002110 GO:0005515
Pvu2g2902 710 ProSiteProfiles Ankyrin repeat region circular profile. 619 650 - -
Pvu2g2902 710 ProSiteProfiles Ankyrin repeat profile. 652 684 IPR002110 GO:0005515
Pvu2g2902 710 SUPERFAMILY PH domain-like 195 347 - -
Pvu2g2902 710 MobiDBLite consensus disorder prediction 341 375 - -
Pvu2g2902 710 Coils Coil 129 149 - -
Pvu2g2902 710 ProSiteProfiles ARF GTPase-activating proteins domain profile. 401 546 IPR001164 GO:0005096
Pvu2g2902 710 PRINTS HIV Rev interacting protein signature 413 432 IPR001164 GO:0005096
Pvu2g2902 710 PRINTS HIV Rev interacting protein signature 432 449 IPR001164 GO:0005096
Pvu2g2902 710 PRINTS HIV Rev interacting protein signature 455 476 IPR001164 GO:0005096
Pvu2g2902 710 PANTHER CENTAURIN/ARF 1 710 IPR045258 GO:0005096
Pvu2g2902 710 SMART PH_update 195 332 IPR001849 -
Pvu2g2902 710 Gene3D Arf GTPase activating protein 382 545 IPR038508 -
Pvu2g2902 710 Pfam Putative GTPase activating protein for Arf 404 539 IPR001164 GO:0005096
Pvu2g2902 710 Pfam BAR domain of APPL family 6 135 - -
Pvu2g2902 710 Pfam PH domain 196 329 IPR001849 -
Pvu2g2902 710 Gene3D - 584 710 IPR036770 -
Pvu2g2902 710 Gene3D Arfaptin homology (AH) domain/BAR domain 1 152 IPR027267 -
Pvu2g2902 710 MobiDBLite consensus disorder prediction 348 372 - -
Pvu2g2902 710 ProSiteProfiles Ankyrin repeat region circular profile. 652 684 - -
Pvu2g2902 710 Gene3D - 187 343 IPR011993 -
Pvu2g2902 710 CDD PH_ACAP 197 334 - -
Pvu2g2902 710 SMART arf_gap_3 401 546 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2902 Pvu-Chr2 44567325 44579805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2902 407 544 C2H2 Transcription Factor Family AT4G21160 40.141 1.23e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2902 K12489 - gmx:100792517 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2902 2 44567325 44579805 Pvu2g2902 2 44567325 44579805 ECH
Pvu2g2902 2 44567325 44579805 Pvu9g1670 9 23489781 23497230 PCT