Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2897 ATGCCTTTTCAAATCATGGATCACAGGGGCGTTTCTGCTTCATCCCACTTTTTTGAAGACGTTTCCTTTCGTTCTGAGAGGAATGTTGGACTACGGAAACCAATATCCATTAATGACCATTACCCACAAGGAAGCAATGGAATGGTAGCATCACCAGGCAGCATTTTGAACAGTACACCACCCCTTGATGTAAATGCAAAAGCTGGTTTGCTGATGTCCCAGGCTAGTCTACCTGGGAATAGTATAGATTCCAAGGAATCATTGAATTATTGTCCCAAATCATTGTCTGATGCATCTCTGCATTCGGCACCTACCTCATATGGTTTAATTGGGAACAAGATTGTGACCAGTGCTGCCCCCTGTGAAAGTAGTTTATTCTCAAGCTCTATGTCTGAGATATTTAGCCGAAAGTTACGGTTGTTTGGAAATGATGTTCAGTCTGATCAGTCTATTACTGCTGGTTTTCCTGAGGAACCATATAAATCTCTTAAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCCGACGAAGAGGATCTGTTTTCTGGTGTTGTTGACGAGTTAGGATGCAGTTCTCATGCCAAAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGACGAACATTTAAGTTCAGGAAAAATGATGAATGGTCTTGATGGAGATTATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGGTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCTATGTAGAAGACTCTGAGCTAAAGGATCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGTGGATTTGTCATGATTTCTTATCATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCTAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTGAAAAAGATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCTGAAATGAATCATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAATCTGCCCTTCGTGCTTTGAACAAGATGGACATTGCTGGAAAGCAGATCAAGCTTGAACCTGGTCATCCTAGTTTGATGCACCAGTCTCATAAGGGGCAAGATGAGCGAGATTTTGGTCAAAGTATTATGGACAATTTACCATTAAGACCAAAGGCATCAGGGTCTTCTGGAGTAATTGGATCTGGTTGCTTGGAAAATGGATATAACCAGAGGTTTCAATCTACAGTGCGGCAACCTATTAATGCATTTATGGATAATGCATTCATTAATGTGAACTCTGGTATTCACAACACTGTGAGAGGGGCATCTGCTGGAAAAGTGTCTGGAGTTAGTGAGTCTAGTGGCTATGTTGATGCAATGAAATTTGCATCTAGTTCGAGATTTCATCCTCATTCCTTACCCGAGTATCATGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCACCATTAGCAACTTGTCTAACAATATAGGTGCTGGAGCTGCAGAAGCCTCTGATGGTAGGCATATTCAGGGAATGGGCTCAACTGGGAACTTAGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCTAGTAATGTGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTCTTTCTCCGAGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATTTGCTGAGAACACCACATATGATGGACCACCATGTCGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGGGCAAATTCTTATTTGGGAGGGTCCCCTGATGCCTCTGGTTTTCGCTTGGGTTCTCTAGGGAGTGGAGGTTTTCATGGTTCCTGGCAATTGCGTCCCCTGGATTTTCCTTCTCACAATGTGTTTTCTCATGTTGGTGGGAATGGCACTGAACTGACGTCCAATGCTGGACAGAACTCTCCTAAGCAGTTGTCCCATGTTTTCCCTGCGAGACATCCCATGACTTCAATGTCAAAATTTGATGTTACCAATGAACGAATGAGAAACCTTTATCACCGTAGAAATGAAGCAAGCACCAACAATGTTGATAAGAAGCAATACGAACTTGACCTAGGTCGTATATTGCGTGGGGAAGACAGCCGAACTACCCTTATGATAAAAAATATTCCCAACAA 2357 0.4154 MPFQIMDHRGVSASSHFFEDVSFRSERNVGLRKPISINDHYPQGSNGMVASPGSILNSTPPLDVNAKAGLLMSQASLPGNSIDSKESLNYCPKSLSDASLHSAPTSYGLIGNKIVTSAAPCESSLFSSSMSEIFSRKLRLFGNDVQSDQSITAGFPEEPYKSLKEMEADTIGNLLPDEEDLFSGVVDELGCSSHAKTNDDFEDFDLFSSGGGMEMEGDEHLSSGKMMNGLDGDYGFFGGSKGKLPFGEQPSRTLFVRNINSYVEDSELKDLFEQYGDIRTIYTACKHRGFVMISYHDLRAAQNAMQALQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELKKIFGFYGEIKEIYEYPEMNHHKFIEFYDVRAAESALRALNKMDIAGKQIKLEPGHPSLMHQSHKGQDERDFGQSIMDNLPLRPKASGSSGVIGSGCLENGYNQRFQSTVRQPINAFMDNAFINVNSGIHNTVRGASAGKVSGVSESSGYVDAMKFASSSRFHPHSLPEYHDSLANGSPYNFSSTISNLSNNIGAGAAEASDGRHIQGMGSTGNLAEFNAGGNGIRPHGLYHMWNSSNLQQQPSSSNVLWQKSPSFVNDALSPSLPQMSSFARTPPHLLRTPHMMDHHVGSAPVVTASPWERANSYLGGSPDASGFRLGSLGSGGFHGSWQLRPLDFPSHNVFSHVGGNGTELTSNAGQNSPKQLSHVFPARHPMTSMSKFDVTNERMRNLYHRRNEASTNNVDKKQYELDLGRILRGEDSRTTLMIKNIPN 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2897 785 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 785 - -
Pvu2g2897 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 410 IPR000504 GO:0003723
Pvu2g2897 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 325 IPR000504 GO:0003723
Pvu2g2897 785 SMART rrm1_1 253 321 IPR000504 GO:0003723
Pvu2g2897 785 SMART rrm1_1 338 406 IPR000504 GO:0003723
Pvu2g2897 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 318 IPR000504 GO:0003723
Pvu2g2897 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 404 IPR000504 GO:0003723
Pvu2g2897 785 CDD RRM1_MEI2_like 251 326 IPR034453 -
Pvu2g2897 785 Gene3D - 246 335 IPR012677 -
Pvu2g2897 785 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 785 - -
Pvu2g2897 785 SUPERFAMILY RNA-binding domain, RBD 249 408 IPR035979 GO:0003676
Pvu2g2897 785 Gene3D - 336 429 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2897 Pvu-Chr2 44523569 44529595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2897 250 403 Eukaryotic Initiation Factors Gene Family AT1G71770 25.767 6.79e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2897 - - gmx:100797893 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2897 2 44523569 44529595 Pvu9g1666 9 23396369 23402117 PCT