Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2891 ATGAAAAGGAAAGTTGCCAAAGTGGATCGAAAACATGGGAAGAGGCCACTTCCTTTGGAAGAAGAAGAAGAAGAAGCAGAAGAAAAAACGTTTCCGTTTTATTTTTCTCAGTCTAAGCAAGACATATCAGCTGTGGTATCAGCCCTTGTTGAAGTCATTGGTGGCAAACCACAGCACAAAGATCCAACAACAACAGTGTCTCAGTCTAGTGCTGTTGAGAATATTTCGAATTTACCATCACATCCACCACAACACCAAGGAAACGCAAGAAGACAGTATAGAGGAGTGAGACAGCGACCATGGGGGAAGTGGGCCGCGGAGATTCGCGACCCGAAGAAAGCAGCCAGAGTTTGGCTGGGAACTTTCCCCACCGCGGAGGCTGCTGCACTTGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAACCAAAGCCAAGCTCAATTTTCCAGAAAAAGTTCATCGCTCAGGGGAATTAGGTTACCTCACAAATCGACCACCATCACTACAACCTTCTTCCACTTCCTTCCAACTGCTTCCTCGTCACACTGCAACTAATAACGATGCTATTGTTTCTTCGTCTTCTTCGTCATCTTCTTCAACCTTCTCCATGAAATCCGCAGCTTCTTCTTCCGAGCCTCCTACCAAACGAACATCTGATTTCGATGCCAAACAAAAACGCTGA 681 0.4596 MKRKVAKVDRKHGKRPLPLEEEEEEAEEKTFPFYFSQSKQDISAVVSALVEVIGGKPQHKDPTTTVSQSSAVENISNLPSHPPQHQGNARRQYRGVRQRPWGKWAAEIRDPKKAARVWLGTFPTAEAAALAYDEAALRFKGTKAKLNFPEKVHRSGELGYLTNRPPSLQPSSTSFQLLPRHTATNNDAIVSSSSSSSSSTFSMKSAASSSEPPTKRTSDFDAKQKR* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2891 226 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Pvu2g2891 226 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Pvu2g2891 226 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Pvu2g2891 226 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Pvu2g2891 226 MobiDBLite consensus disorder prediction 157 226 - -
Pvu2g2891 226 MobiDBLite consensus disorder prediction 162 215 - -
Pvu2g2891 226 MobiDBLite consensus disorder prediction 60 87 - -
Pvu2g2891 226 MobiDBLite consensus disorder prediction 1 26 - -
Pvu2g2891 226 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Pvu2g2891 226 PANTHER DNA-BINDING DOMAIN 33 212 IPR044808 GO:0003700|GO:0009873
Pvu2g2891 226 MobiDBLite consensus disorder prediction 56 96 - -
Pvu2g2891 226 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Pvu2g2891 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 33 212 - -
Pvu2g2891 226 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Pvu2g2891 226 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2891 Pvu-Chr2 44487105 44490185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2891 12 189 AP2-EREBP Transcription Factor Family AT5G61890 48.223 3.59e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu2g2891 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2891 - - vra:106766671 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2891 2 44487105 44490185 Pvu2g2891 2 44487105 44490185 ECH
Pvu2g2891 2 44487105 44490185 Pvu9g1662 9 23312039 23314113 ECH
Pvu2g2891 2 44487105 44490185 Pvu1g0867 1 14986698 14988815 ECH
Pvu2g2891 2 44487105 44490185 Pvu9g1662 9 23312039 23314113 PCT